Literature DB >> 2306494

Global parameter optimization for cardiac potassium channel gating models.

J R Balser1, D M Roden, P B Bennett.   

Abstract

Quantitative ion channel model evaluation requires the estimation of voltage dependent rate constants. We have tested whether a unique set of rate constants can be reliably extracted from nonstationary macroscopic voltage clamp potassium current data. For many models, the rate constants derived independently at different membrane potentials are not unique. Therefore, our approach has been to use the exponential voltage dependence predicted from reaction rate theory (Stevens, C. F. 1978. Biophys. J. 22:295-306; Eyring, H., S. H. Lin, and S. M. Lin. 1980. Basic Chemical Kinetics. Wiley and Sons, New York) to couple the rate constants derived at different membrane potentials. This constrained the solution set of rate constants to only those that also obeyed this additional set of equations, which was sufficient to obtain a unique solution. We have tested this approach with data obtained from macroscopic delayed rectifier potassium channel currents in voltage-clamped guinea pig ventricular myocyte membranes. This potassium channel has relatively simple kinetics without an inactivation process and provided a convenient system to determine a globally optimized set of voltage-dependent rate constants for a Markov kinetic model. The ability of the fitting algorithm to extract rate constants from the macroscopic current data was tested using "data" synthesized from known rate constants. The simulated data sets were analyzed with the global fitting procedure and the fitted rate constants were compared with the rate constants used to generate the data. Monte Carlo methods were used to examine the accuracy of the estimated kinetic parameters. This global fitting approach provided a useful and convenient method for reliably extracting Markov rate constants from macroscopic voltage clamp data over a broad range of membrane potentials. The limitations of the method and the dependence on initial guesses are described.

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Year:  1990        PMID: 2306494      PMCID: PMC1280738          DOI: 10.1016/S0006-3495(90)82560-1

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  22 in total

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Authors:  A L HODGKIN; A F HUXLEY
Journal:  J Physiol       Date:  1952-08       Impact factor: 5.182

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Authors:  D E Clapham; L J Defelice
Journal:  Biophys J       Date:  1984-01       Impact factor: 4.033

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Authors:  P B Bennett; L C McKinney; R S Kass; T Begenisich
Journal:  Biophys J       Date:  1985-10       Impact factor: 4.033

4.  Structural parts involved in activation and inactivation of the sodium channel.

Authors:  W Stühmer; F Conti; H Suzuki; X D Wang; M Noda; N Yahagi; H Kubo; S Numa
Journal:  Nature       Date:  1989-06-22       Impact factor: 49.962

5.  A uniform enzymatic method for dissociation of myocytes from hearts and stomachs of vertebrates.

Authors:  R Mitra; M Morad
Journal:  Am J Physiol       Date:  1985-11

6.  Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches.

Authors:  O P Hamill; A Marty; E Neher; B Sakmann; F J Sigworth
Journal:  Pflugers Arch       Date:  1981-08       Impact factor: 3.657

Review 7.  Sodium channels and gating currents.

Authors:  C M Armstrong
Journal:  Physiol Rev       Date:  1981-07       Impact factor: 37.312

8.  Gating of delayed rectification in acutely isolated canine cardiac Purkinje myocytes. Evidence for a single voltage-gated conductance.

Authors:  G A Gintant; N B Datyner; I S Cohen
Journal:  Biophys J       Date:  1985-12       Impact factor: 4.033

9.  Quinidine delays IK activation in guinea pig ventricular myocytes.

Authors:  D M Roden; P B Bennett; D J Snyders; J R Balser; L M Hondeghem
Journal:  Circ Res       Date:  1988-05       Impact factor: 17.367

10.  Statistical properties of single sodium channels.

Authors:  R Horn; C A Vandenberg
Journal:  J Gen Physiol       Date:  1984-10       Impact factor: 4.086

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  21 in total

1.  A novel extracellular calcium sensing mechanism in voltage-gated potassium ion channels.

Authors:  J P Johnson; J R Balser; P B Bennett
Journal:  J Neurosci       Date:  2001-06-15       Impact factor: 6.167

2.  Voltage-dependent gating mechanism for single fast chloride channels from rat skeletal muscle.

Authors:  D S Weiss; K L Magleby
Journal:  J Physiol       Date:  1992       Impact factor: 5.182

Review 3.  Ion channel gating in plants: physiological implications and integration for stomatal function.

Authors:  M R Blatt
Journal:  J Membr Biol       Date:  1991-11       Impact factor: 1.843

4.  Gating of the HypoPP-1 mutations: I. Mutant-specific effects and cooperativity.

Authors:  Alexey Kuzmenkin; Chao Hang; Elza Kuzmenkina; Karin Jurkat-Rott
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5.  On the extraction of kinetic rate constants from experimental data.

Authors:  L Goldman
Journal:  Biophys J       Date:  1991-08       Impact factor: 4.033

6.  Coupling between fast and slow inactivation revealed by analysis of a point mutation (F1304Q) in mu 1 rat skeletal muscle sodium channels.

Authors:  H B Nuss; J R Balser; D W Orias; J H Lawrence; G F Tomaselli; E Marban
Journal:  J Physiol       Date:  1996-07-15       Impact factor: 5.182

7.  Single-channel analysis of inactivation-defective rat skeletal muscle sodium channels containing the F1304Q mutation.

Authors:  J H Lawrence; D W Orias; J R Balser; H B Nuss; G F Tomaselli; B O'Rourke; E Marban
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

8.  A revised view of cardiac sodium channel "blockade" in the long-QT syndrome.

Authors:  N G Kambouris; H B Nuss; D C Johns; E Marbán; G F Tomaselli; J R Balser
Journal:  J Clin Invest       Date:  2000-04       Impact factor: 14.808

9.  Lidocaine induces a slow inactivated state in rat skeletal muscle sodium channels.

Authors:  Z Chen; B H Ong; N G Kambouris; E Marbán; G F Tomaselli; J R Balser
Journal:  J Physiol       Date:  2000-04-01       Impact factor: 5.182

10.  Kinetics of (+)-tubocurarine blockade at the neuromuscular junction.

Authors:  A C Le Dain; B W Madsen; R O Edeson
Journal:  Br J Pharmacol       Date:  1991-06       Impact factor: 8.739

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