Literature DB >> 23062332

Unlocking the atomic-level details of amyloid fibril growth through advanced biomolecular simulations.

Nicolae-Viorel Buchete1.   

Abstract

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Year:  2012        PMID： 23062332      PMCID： PMC3471480          DOI： 10.1016/j.bpj.2012.08.052

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


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  21 in total

1.  Kinetic analysis of beta-amyloid fibril elongation.

Authors:  Michelle J Cannon; Angela D Williams; Ronald Wetzel; David G Myszka
Journal:  Anal Biochem       Date:  2004-05-01       Impact factor: 3.365

Review 2.  Toward a molecular theory of early and late events in monomer to amyloid fibril formation.

Authors:  John E Straub; D Thirumalai
Journal:  Annu Rev Phys Chem       Date:  2011       Impact factor: 12.703

3.  Molecular interactions of Alzheimer's Aβ protofilaments with lipid membranes.

Authors:  Florentina Tofoleanu; Nicolae-Viorel Buchete
Journal:  J Mol Biol       Date:  2012-01-17       Impact factor: 5.469

4.  Coarse master equations for peptide folding dynamics.

Authors:  Nicolae-Viorel Buchete; Gerhard Hummer
Journal:  J Phys Chem B       Date:  2008-01-31       Impact factor: 2.991

5.  Dynamics of locking of peptides onto growing amyloid fibrils.

Authors:  Govardhan Reddy; John E Straub; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-06       Impact factor: 11.205

6.  Single-molecule fluorescence experiments determine protein folding transition path times.

Authors:  Hoi Sung Chung; Kevin McHale; John M Louis; William A Eaton
Journal:  Science       Date:  2012-02-24       Impact factor: 47.728

7.  Elucidating the locking mechanism of peptides onto growing amyloid fibrils through transition path sampling.

Authors:  Marieke Schor; Jocelyne Vreede; Peter G Bolhuis
Journal:  Biophys J       Date:  2012-09-19       Impact factor: 4.033

8.  Observation of spatial propagation of amyloid assembly from single nuclei.

Authors:  Tuomas P J Knowles; Duncan A White; Adam R Abate; Jeremy J Agresti; Samuel I A Cohen; Ralph A Sperling; Erwin J De Genst; Christopher M Dobson; David A Weitz
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-26       Impact factor: 11.205

9.  Thermodynamic perspective on the dock-lock growth mechanism of amyloid fibrils.

Authors:  Edward P O'Brien; Yuko Okamoto; John E Straub; Bernard R Brooks; D Thirumalai
Journal:  J Phys Chem B       Date:  2009-10-29       Impact factor: 2.991

10.  Alzheimer Aβ peptide interactions with lipid membranes: fibrils, oligomers and polymorphic amyloid channels.

Authors:  Florentina Tofoleanu; Nicolae-Viorel Buchete
Journal:  Prion       Date:  2012-08-09       Impact factor: 3.931
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  5 in total

1.  Conformational analysis of replica exchange MD: Temperature-dependent Markov networks for FF amyloid peptides.

Authors:  Brajesh Narayan; Colm Herbert; Ye Yuan; Brian J Rodriguez; Bernard R Brooks; Nicolae-Viorel Buchete
Journal:  J Chem Phys       Date:  2018-08-21       Impact factor: 3.488

Review 2.  Disordered amyloidogenic peptides may insert into the membrane and assemble into common cyclic structural motifs.

Authors:  Hyunbum Jang; Fernando Teran Arce; Srinivasan Ramachandran; Bruce L Kagan; Ratnesh Lal; Ruth Nussinov
Journal:  Chem Soc Rev       Date:  2014-10-07       Impact factor: 54.564

3.  Conformational dynamics and aggregation behavior of piezoelectric diphenylalanine peptides in an external electric field.

Authors:  Catherine M Kelly; Thomas Northey; Kate Ryan; Bernard R Brooks; Andrei L Kholkin; Brian J Rodriguez; Nicolae-Viorel Buchete
Journal:  Biophys Chem       Date:  2014-09-07       Impact factor: 2.352

4.  Computational Methods for Structural and Functional Studies of Alzheimer's Amyloid Ion Channels.

Authors:  Hyunbum Jang; Fernando Teran Arce; Joon Lee; Alan L Gillman; Srinivasan Ramachandran; Bruce L Kagan; Ratnesh Lal; Ruth Nussinov
Journal:  Methods Mol Biol       Date:  2016

5.  A Monte Carlo Study of the Early Steps of Functional Amyloid Formation.

Authors:  Pengfei Tian; Kresten Lindorff-Larsen; Wouter Boomsma; Mogens Høgh Jensen; Daniel Erik Otzen
Journal:  PLoS One       Date:  2016-01-08       Impact factor: 3.240
  5 in total

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