Literature DB >> 23055411

Sequencing of rhesus macaque Y chromosome clarifies origins and evolution of the DAZ (Deleted in AZoospermia) genes.

Jennifer F Hughes1, Helen Skaletsky, David C Page.   

Abstract

Studies of Y chromosome evolution often emphasize gene loss, but this loss has been counterbalanced by addition of new genes. The DAZ genes, which are critical to human spermatogenesis, were acquired by the Y chromosome in the ancestor of Old World monkeys and apes. We and our colleagues recently sequenced the rhesus macaque Y chromosome, and comparison of this sequence to human and chimpanzee enables us to reconstruct much of the evolutionary history of DAZ. We report that DAZ arrived on the Y chromosome about 38 million years ago via the transposition of at least 1.1 megabases of autosomal DNA. This transposition also brought five additional genes to the Y chromosome, but all five genes were subsequently lost through mutation or deletion. As the only surviving gene, DAZ experienced extensive restructuring, including intragenic amplification and gene duplication, and has been the target of positive selection in the chimpanzee lineage. Editor's suggested further reading in BioEssays Should Y stay or should Y go: The evolution of non-recombining sex chromosomes Abstract.
Copyright © 2012 WILEY Periodicals, Inc.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23055411      PMCID: PMC3581811          DOI: 10.1002/bies.201200066

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  48 in total

Review 1.  The degeneration of Y chromosomes.

Authors:  B Charlesworth; D Charlesworth
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2000-11-29       Impact factor: 6.237

2.  Four DAZ genes in two clusters found in the AZFc region of the human Y chromosome.

Authors:  R Saxena; J W de Vries; S Repping; R K Alagappan; H Skaletsky; L G Brown; P Ma; E Chen; J M Hoovers; D C Page
Journal:  Genomics       Date:  2000-08-01       Impact factor: 5.736

3.  VISTA : visualizing global DNA sequence alignments of arbitrary length.

Authors:  C Mayor; M Brudno; J R Schwartz; A Poliakov; E M Rubin; K A Frazer; L S Pachter; I Dubchak
Journal:  Bioinformatics       Date:  2000-11       Impact factor: 6.937

4.  In vivo and in vitro analysis of homodimerisation activity of the mouse Dazl1 protein.

Authors:  M Ruggiu; H J Cooke
Journal:  Gene       Date:  2000-07-11       Impact factor: 3.688

5.  The DNA sequence of the human X chromosome.

Authors:  Mark T Ross; Darren V Grafham; Alison J Coffey; Steven Scherer; Kirsten McLay; Donna Muzny; Matthias Platzer; Gareth R Howell; Christine Burrows; Christine P Bird; Adam Frankish; Frances L Lovell; Kevin L Howe; Jennifer L Ashurst; Robert S Fulton; Ralf Sudbrak; Gaiping Wen; Matthew C Jones; Matthew E Hurles; T Daniel Andrews; Carol E Scott; Stephen Searle; Juliane Ramser; Adam Whittaker; Rebecca Deadman; Nigel P Carter; Sarah E Hunt; Rui Chen; Andrew Cree; Preethi Gunaratne; Paul Havlak; Anne Hodgson; Michael L Metzker; Stephen Richards; Graham Scott; David Steffen; Erica Sodergren; David A Wheeler; Kim C Worley; Rachael Ainscough; Kerrie D Ambrose; M Ali Ansari-Lari; Swaroop Aradhya; Robert I S Ashwell; Anne K Babbage; Claire L Bagguley; Andrea Ballabio; Ruby Banerjee; Gary E Barker; Karen F Barlow; Ian P Barrett; Karen N Bates; David M Beare; Helen Beasley; Oliver Beasley; Alfred Beck; Graeme Bethel; Karin Blechschmidt; Nicola Brady; Sarah Bray-Allen; Anne M Bridgeman; Andrew J Brown; Mary J Brown; David Bonnin; Elspeth A Bruford; Christian Buhay; Paula Burch; Deborah Burford; Joanne Burgess; Wayne Burrill; John Burton; Jackie M Bye; Carol Carder; Laura Carrel; Joseph Chako; Joanne C Chapman; Dean Chavez; Ellson Chen; Guan Chen; Yuan Chen; Zhijian Chen; Craig Chinault; Alfredo Ciccodicola; Sue Y Clark; Graham Clarke; Chris M Clee; Sheila Clegg; Kerstin Clerc-Blankenburg; Karen Clifford; Vicky Cobley; Charlotte G Cole; Jen S Conquer; Nicole Corby; Richard E Connor; Robert David; Joy Davies; Clay Davis; John Davis; Oliver Delgado; Denise Deshazo; Pawandeep Dhami; Yan Ding; Huyen Dinh; Steve Dodsworth; Heather Draper; Shannon Dugan-Rocha; Andrew Dunham; Matthew Dunn; K James Durbin; Ireena Dutta; Tamsin Eades; Matthew Ellwood; Alexandra Emery-Cohen; Helen Errington; Kathryn L Evans; Louisa Faulkner; Fiona Francis; John Frankland; Audrey E Fraser; Petra Galgoczy; James Gilbert; Rachel Gill; Gernot Glöckner; Simon G Gregory; Susan Gribble; Coline Griffiths; Russell Grocock; Yanghong Gu; Rhian Gwilliam; Cerissa Hamilton; Elizabeth A Hart; Alicia Hawes; Paul D Heath; Katja Heitmann; Steffen Hennig; Judith Hernandez; Bernd Hinzmann; Sarah Ho; Michael Hoffs; Phillip J Howden; Elizabeth J Huckle; Jennifer Hume; Paul J Hunt; Adrienne R Hunt; Judith Isherwood; Leni Jacob; David Johnson; Sally Jones; Pieter J de Jong; Shirin S Joseph; Stephen Keenan; Susan Kelly; Joanne K Kershaw; Ziad Khan; Petra Kioschis; Sven Klages; Andrew J Knights; Anna Kosiura; Christie Kovar-Smith; Gavin K Laird; Cordelia Langford; Stephanie Lawlor; Margaret Leversha; Lora Lewis; Wen Liu; Christine Lloyd; David M Lloyd; Hermela Loulseged; Jane E Loveland; Jamieson D Lovell; Ryan Lozado; Jing Lu; Rachael Lyne; Jie Ma; Manjula Maheshwari; Lucy H Matthews; Jennifer McDowall; Stuart McLaren; Amanda McMurray; Patrick Meidl; Thomas Meitinger; Sarah Milne; George Miner; Shailesh L Mistry; Margaret Morgan; Sidney Morris; Ines Müller; James C Mullikin; Ngoc Nguyen; Gabriele Nordsiek; Gerald Nyakatura; Christopher N O'Dell; Geoffery Okwuonu; Sophie Palmer; Richard Pandian; David Parker; Julia Parrish; Shiran Pasternak; Dina Patel; Alex V Pearce; Danita M Pearson; Sarah E Pelan; Lesette Perez; Keith M Porter; Yvonne Ramsey; Kathrin Reichwald; Susan Rhodes; Kerry A Ridler; David Schlessinger; Mary G Schueler; Harminder K Sehra; Charles Shaw-Smith; Hua Shen; Elizabeth M Sheridan; Ratna Shownkeen; Carl D Skuce; Michelle L Smith; Elizabeth C Sotheran; Helen E Steingruber; Charles A Steward; Roy Storey; R Mark Swann; David Swarbreck; Paul E Tabor; Stefan Taudien; Tineace Taylor; Brian Teague; Karen Thomas; Andrea Thorpe; Kirsten Timms; Alan Tracey; Steve Trevanion; Anthony C Tromans; Michele d'Urso; Daniel Verduzco; Donna Villasana; Lenee Waldron; Melanie Wall; Qiaoyan Wang; James Warren; Georgina L Warry; Xuehong Wei; Anthony West; Siobhan L Whitehead; Mathew N Whiteley; Jane E Wilkinson; David L Willey; Gabrielle Williams; Leanne Williams; Angela Williamson; Helen Williamson; Laurens Wilming; Rebecca L Woodmansey; Paul W Wray; Jennifer Yen; Jingkun Zhang; Jianling Zhou; Huda Zoghbi; Sara Zorilla; David Buck; Richard Reinhardt; Annemarie Poustka; André Rosenthal; Hans Lehrach; Alfons Meindl; Patrick J Minx; Ladeana W Hillier; Huntington F Willard; Richard K Wilson; Robert H Waterston; Catherine M Rice; Mark Vaudin; Alan Coulson; David L Nelson; George Weinstock; John E Sulston; Richard Durbin; Tim Hubbard; Richard A Gibbs; Stephan Beck; Jane Rogers; David R Bentley
Journal:  Nature       Date:  2005-03-17       Impact factor: 49.962

6.  Association of the mouse infertility factor DAZL1 with actively translating polyribosomes.

Authors:  S Tsui; T Dai; S T Warren; E C Salido; P H Yen
Journal:  Biol Reprod       Date:  2000-06       Impact factor: 4.285

7.  Remarkably little variation in proteins encoded by the Y chromosome's single-copy genes, implying effective purifying selection.

Authors:  Steve Rozen; Janet D Marszalek; Raaji K Alagappan; Helen Skaletsky; David C Page
Journal:  Am J Hum Genet       Date:  2009-12       Impact factor: 11.025

Review 8.  The genetics of male infertility.

Authors:  Thomas J Walsh; Renee Reijo Pera; Paul J Turek
Journal:  Semin Reprod Med       Date:  2009-02-26       Impact factor: 1.303

9.  A critical role for Xdazl, a germ plasm-localized RNA, in the differentiation of primordial germ cells in Xenopus.

Authors:  D W Houston; M L King
Journal:  Development       Date:  2000-02       Impact factor: 6.868

10.  Caenorhabditis elegans homologue of the human azoospermia factor DAZ is required for oogenesis but not for spermatogenesis.

Authors:  T Karashima; A Sugimoto; M Yamamoto
Journal:  Development       Date:  2000-03       Impact factor: 6.868

View more
  14 in total

1.  Origins and functional evolution of Y chromosomes across mammals.

Authors:  Diego Cortez; Ray Marin; Deborah Toledo-Flores; Laure Froidevaux; Angélica Liechti; Paul D Waters; Frank Grützner; Henrik Kaessmann
Journal:  Nature       Date:  2014-04-24       Impact factor: 49.962

Review 2.  The Y Chromosome as a Battleground for Intragenomic Conflict.

Authors:  Doris Bachtrog
Journal:  Trends Genet       Date:  2020-05-21       Impact factor: 11.639

3.  Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle.

Authors:  Songlin Chen; Guojie Zhang; Changwei Shao; Quanfei Huang; Geng Liu; Pei Zhang; Wentao Song; Na An; Domitille Chalopin; Jean-Nicolas Volff; Yunhan Hong; Qiye Li; Zhenxia Sha; Heling Zhou; Mingshu Xie; Qiulin Yu; Yang Liu; Hui Xiang; Na Wang; Kui Wu; Changgeng Yang; Qian Zhou; Xiaolin Liao; Linfeng Yang; Qiaomu Hu; Jilin Zhang; Liang Meng; Lijun Jin; Yongsheng Tian; Jinmin Lian; Jingfeng Yang; Guidong Miao; Shanshan Liu; Zhuo Liang; Fang Yan; Yangzhen Li; Bin Sun; Hong Zhang; Jing Zhang; Ying Zhu; Min Du; Yongwei Zhao; Manfred Schartl; Qisheng Tang; Jun Wang
Journal:  Nat Genet       Date:  2014-02-02       Impact factor: 38.330

4.  Two acquired mouse Y chromosome-linked genes, Prssly and Teyorf1, are dispensable for male fertility‡.

Authors:  Hayden Holmlund; Yasuhiro Yamauchi; Gerald Durango; Wataru Fujii; Monika A Ward
Journal:  Biol Reprod       Date:  2022-09-12       Impact factor: 4.161

5.  Epigenetic regulation of bovine spermatogenic cell-specific gene boule.

Authors:  Wang Yao; Yinxia Li; Bojiang Li; Hua Luo; Hongtao Xu; Zengxiang Pan; Zhuang Xie; Qifa Li
Journal:  PLoS One       Date:  2015-06-01       Impact factor: 3.240

6.  Multicopy gene family evolution on primate Y chromosomes.

Authors:  Ana-Hermina Ghenu; Benjamin M Bolker; Don J Melnick; Ben J Evans
Journal:  BMC Genomics       Date:  2016-02-29       Impact factor: 3.969

7.  Y-Chromosome Structural Diversity in the Bonobo and Chimpanzee Lineages.

Authors:  Matthew T Oetjens; Feichen Shen; Sarah B Emery; Zhengting Zou; Jeffrey M Kidd
Journal:  Genome Biol Evol       Date:  2016-08-03       Impact factor: 3.416

8.  A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y.

Authors:  Marta Tomaszkiewicz; Samarth Rangavittal; Monika Cechova; Rebeca Campos Sanchez; Howard W Fescemyer; Robert Harris; Danling Ye; Patricia C M O'Brien; Rayan Chikhi; Oliver A Ryder; Malcolm A Ferguson-Smith; Paul Medvedev; Kateryna D Makova
Journal:  Genome Res       Date:  2016-03-02       Impact factor: 9.043

9.  The pig X and Y Chromosomes: structure, sequence, and evolution.

Authors:  Benjamin M Skinner; Carole A Sargent; Carol Churcher; Toby Hunt; Javier Herrero; Jane E Loveland; Matt Dunn; Sandra Louzada; Beiyuan Fu; William Chow; James Gilbert; Siobhan Austin-Guest; Kathryn Beal; Denise Carvalho-Silva; William Cheng; Daria Gordon; Darren Grafham; Matt Hardy; Jo Harley; Heidi Hauser; Philip Howden; Kerstin Howe; Kim Lachani; Peter J I Ellis; Daniel Kelly; Giselle Kerry; James Kerwin; Bee Ling Ng; Glen Threadgold; Thomas Wileman; Jonathan M D Wood; Fengtang Yang; Jen Harrow; Nabeel A Affara; Chris Tyler-Smith
Journal:  Genome Res       Date:  2015-11-11       Impact factor: 9.043

Review 10.  Patterns of Inter-Chromosomal Gene Conversion on the Male-Specific Region of the Human Y Chromosome.

Authors:  Beniamino Trombetta; Eugenia D'Atanasio; Fulvio Cruciani
Journal:  Front Genet       Date:  2017-05-03       Impact factor: 4.599

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.