Literature DB >> 24487278

Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle.

Songlin Chen1, Guojie Zhang2, Changwei Shao3, Quanfei Huang2, Geng Liu2, Pei Zhang2, Wentao Song4, Na An5, Domitille Chalopin6, Jean-Nicolas Volff6, Yunhan Hong7, Qiye Li5, Zhenxia Sha4, Heling Zhou5, Mingshu Xie4, Qiulin Yu5, Yang Liu8, Hui Xiang9, Na Wang4, Kui Wu5, Changgeng Yang4, Qian Zhou5, Xiaolin Liao4, Linfeng Yang5, Qiaomu Hu4, Jilin Zhang5, Liang Meng4, Lijun Jin5, Yongsheng Tian4, Jinmin Lian5, Jingfeng Yang4, Guidong Miao4, Shanshan Liu4, Zhuo Liang4, Fang Yan4, Yangzhen Li4, Bin Sun4, Hong Zhang4, Jing Zhang4, Ying Zhu4, Min Du4, Yongwei Zhao4, Manfred Schartl10, Qisheng Tang3, Jun Wang11.   

Abstract

Genetic sex determination by W and Z chromosomes has developed independently in different groups of organisms. To better understand the evolution of sex chromosomes and the plasticity of sex-determination mechanisms, we sequenced the whole genomes of a male (ZZ) and a female (ZW) half-smooth tongue sole (Cynoglossus semilaevis). In addition to insights into adaptation to a benthic lifestyle, we find that the sex chromosomes of these fish are derived from the same ancestral vertebrate protochromosome as the avian W and Z chromosomes. Notably, the same gene on the Z chromosome, dmrt1, which is the male-determining gene in birds, showed convergent evolution of features that are compatible with a similar function in tongue sole. Comparison of the relatively young tongue sole sex chromosomes with those of mammals and birds identified events that occurred during the early phase of sex-chromosome evolution. Pertinent to the current debate about heterogametic sex-chromosome decay, we find that massive gene loss occurred in the wake of sex-chromosome 'birth'.

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Year:  2014        PMID: 24487278     DOI: 10.1038/ng.2890

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  71 in total

1.  Triploid plover female provides support for a role of the W chromosome in avian sex determination.

Authors:  Clemens Küpper; Jakob Augustin; Scott Edwards; Tamás Székely; András Kosztolányi; Terry Burke; Daniel E Janes
Journal:  Biol Lett       Date:  2012-05-30       Impact factor: 3.703

2.  Sex bias and dosage compensation in the zebra finch versus chicken genomes: general and specialized patterns among birds.

Authors:  Yuichiro Itoh; Kirstin Replogle; Yong-Hwan Kim; Juli Wade; David F Clayton; Arthur P Arnold
Journal:  Genome Res       Date:  2010-03-31       Impact factor: 9.043

Review 3.  Reconstructing the evolution of vertebrate sex chromosomes.

Authors:  D W Bellott; D C Page
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2010-05-27

4.  Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level.

Authors:  Jianzhi Zhang; Rasmus Nielsen; Ziheng Yang
Journal:  Mol Biol Evol       Date:  2005-08-17       Impact factor: 16.240

5.  Genomic organization of the sex-determining and adjacent regions of the sex chromosomes of medaka.

Authors:  Mariko Kondo; Ute Hornung; Indrajit Nanda; Shuichiro Imai; Takashi Sasaki; Atsushi Shimizu; Shuichi Asakawa; Hiroshi Hori; Michael Schmid; Nobuyoshi Shimizu; Manfred Schartl
Journal:  Genome Res       Date:  2006-06-02       Impact factor: 9.043

6.  Dosage compensation for the birds.

Authors:  J A Birchler
Journal:  Heredity (Edinb)       Date:  2009-02-18       Impact factor: 3.821

7.  Asymmetric craniofacial remodeling and lateralized behavior in larval flatfish.

Authors:  Alexander M Schreiber
Journal:  J Exp Biol       Date:  2006-02       Impact factor: 3.312

8.  The sequence and de novo assembly of the giant panda genome.

Authors:  Ruiqiang Li; Wei Fan; Geng Tian; Hongmei Zhu; Lin He; Jing Cai; Quanfei Huang; Qingle Cai; Bo Li; Yinqi Bai; Zhihe Zhang; Yaping Zhang; Wen Wang; Jun Li; Fuwen Wei; Heng Li; Min Jian; Jianwen Li; Zhaolei Zhang; Rasmus Nielsen; Dawei Li; Wanjun Gu; Zhentao Yang; Zhaoling Xuan; Oliver A Ryder; Frederick Chi-Ching Leung; Yan Zhou; Jianjun Cao; Xiao Sun; Yonggui Fu; Xiaodong Fang; Xiaosen Guo; Bo Wang; Rong Hou; Fujun Shen; Bo Mu; Peixiang Ni; Runmao Lin; Wubin Qian; Guodong Wang; Chang Yu; Wenhui Nie; Jinhuan Wang; Zhigang Wu; Huiqing Liang; Jiumeng Min; Qi Wu; Shifeng Cheng; Jue Ruan; Mingwei Wang; Zhongbin Shi; Ming Wen; Binghang Liu; Xiaoli Ren; Huisong Zheng; Dong Dong; Kathleen Cook; Gao Shan; Hao Zhang; Carolin Kosiol; Xueying Xie; Zuhong Lu; Hancheng Zheng; Yingrui Li; Cynthia C Steiner; Tommy Tsan-Yuk Lam; Siyuan Lin; Qinghui Zhang; Guoqing Li; Jing Tian; Timing Gong; Hongde Liu; Dejin Zhang; Lin Fang; Chen Ye; Juanbin Zhang; Wenbo Hu; Anlong Xu; Yuanyuan Ren; Guojie Zhang; Michael W Bruford; Qibin Li; Lijia Ma; Yiran Guo; Na An; Yujie Hu; Yang Zheng; Yongyong Shi; Zhiqiang Li; Qing Liu; Yanling Chen; Jing Zhao; Ning Qu; Shancen Zhao; Feng Tian; Xiaoling Wang; Haiyin Wang; Lizhi Xu; Xiao Liu; Tomas Vinar; Yajun Wang; Tak-Wah Lam; Siu-Ming Yiu; Shiping Liu; Hemin Zhang; Desheng Li; Yan Huang; Xia Wang; Guohua Yang; Zhi Jiang; Junyi Wang; Nan Qin; Li Li; Jingxiang Li; Lars Bolund; Karsten Kristiansen; Gane Ka-Shu Wong; Maynard Olson; Xiuqing Zhang; Songgang Li; Huanming Yang; Jian Wang; Jun Wang
Journal:  Nature       Date:  2009-12-13       Impact factor: 49.962

Review 9.  Are homologies in vertebrate sex determination due to shared ancestry or to limited options?

Authors:  Jennifer A Marshall Graves; Catherine L Peichel
Journal:  Genome Biol       Date:  2010-04-30       Impact factor: 13.583

10.  Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication.

Authors:  Angel Amores; Julian Catchen; Allyse Ferrara; Quenton Fontenot; John H Postlethwait
Journal:  Genetics       Date:  2011-08       Impact factor: 4.562

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  225 in total

1.  Locus Mapping, Molecular Cloning, and Expression Analysis of rps6kb2, a Novel Metamorphosis-Related Gene in Chinese Tongue Sole (Cynoglossus semilaevis).

Authors:  Yang Liu; Min Wei; Hua Guo; Changwei Shao; Liang Meng; Wenteng Xu; Na Wang; Lei Wang; Deborah M Power; Jilun Hou; Shahid Mahboob; Zhongkai Cui; Yingming Yang; Yangzhen Li; Fazhen Zhao; Songlin Chen
Journal:  Mar Biotechnol (NY)       Date:  2017-08-05       Impact factor: 3.619

2.  Transposable elements and early evolution of sex chromosomes in fish.

Authors:  Domitille Chalopin; Jean-Nicolas Volff; Delphine Galiana; Jennifer L Anderson; Manfred Schartl
Journal:  Chromosome Res       Date:  2015-09       Impact factor: 5.239

Review 3.  Dynamics of vertebrate sex chromosome evolution: from equal size to giants and dwarfs.

Authors:  Manfred Schartl; Michael Schmid; Indrajit Nanda
Journal:  Chromosoma       Date:  2015-12-29       Impact factor: 4.316

Review 4.  Evolution of vertebrate sex chromosomes and dosage compensation.

Authors:  Jennifer A Marshall Graves
Journal:  Nat Rev Genet       Date:  2015-11-30       Impact factor: 53.242

Review 5.  Plasticity of gene-regulatory networks controlling sex determination: of masters, slaves, usual suspects, newcomers, and usurpators.

Authors:  Amaury Herpin; Manfred Schartl
Journal:  EMBO Rep       Date:  2015-09-09       Impact factor: 8.807

6.  Establishment and characterization of a gonad cell line from half-smooth tongue sole Cynoglossus semilaevis pseudomale.

Authors:  Ai Sun; Song-Lin Chen; Feng-Tao Gao; Hai-Long Li; Xiao-Feng Liu; Na Wang; Zhen-Xia Sha
Journal:  Fish Physiol Biochem       Date:  2015-02-28       Impact factor: 2.794

7.  High-density linkage mapping aided by transcriptomics documents ZW sex determination system in the Chinese mitten crab Eriocheir sinensis.

Authors:  Z Cui; M Hui; Y Liu; C Song; X Li; Y Li; L Liu; G Shi; S Wang; F Li; X Zhang; C Liu; J Xiang; K H Chu
Journal:  Heredity (Edinb)       Date:  2015-04-15       Impact factor: 3.821

8.  Spexin in the half-smooth tongue sole (Cynoglossus semilaevis): molecular cloning, expression profiles, and physiological effects.

Authors:  Shengpeng Wang; Bin Wang; Songlin Chen
Journal:  Fish Physiol Biochem       Date:  2018-02-05       Impact factor: 2.794

9.  Identification of Sex-Linked SNPs and Sex-Determining Regions in the Yellowtail Genome.

Authors:  Takashi Koyama; Akiyuki Ozaki; Kazunori Yoshida; Junpei Suzuki; Kanako Fuji; Jun-ya Aoki; Wataru Kai; Yumi Kawabata; Tatsuo Tsuzaki; Kazuo Araki; Takashi Sakamoto
Journal:  Mar Biotechnol (NY)       Date:  2015-05-15       Impact factor: 3.619

10.  Origin and transition of sex determination mechanisms in a gynogenetic hexaploid fish.

Authors:  Xi-Yin Li; Xiao-Li Liu; Yao-Jun Zhu; Jun Zhang; Miao Ding; Ming-Tao Wang; Zhong-Wei Wang; Zhi Li; Xiao-Juan Zhang; Li Zhou; Jian-Fang Gui
Journal:  Heredity (Edinb)       Date:  2018-02-02       Impact factor: 3.821

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