Literature DB >> 23053913

Spectral editing of two-dimensional magic-angle-spinning solid-state NMR spectra for protein resonance assignment and structure determination.

K Schmidt-Rohr1, K J Fritzsching, S Y Liao, Mei Hong.   

Abstract

Several techniques for spectral editing of 2D (13)C-(13)C correlation NMR of proteins are introduced. They greatly reduce the spectral overlap for five common amino acid types, thus simplifying spectral assignment and conformational analysis. The carboxyl (COO) signals of glutamate and aspartate are selected by suppressing the overlapping amide N-CO peaks through (13)C-(15)N dipolar dephasing. The sidechain methine (CH) signals of valine, lecuine, and isoleucine are separated from the overlapping methylene (CH(2)) signals of long-chain amino acids using a multiple-quantum dipolar transfer technique. Both the COO and CH selection methods take advantage of improved dipolar dephasing by asymmetric rotational-echo double resonance (REDOR), where every other π-pulse is shifted from the center of a rotor period t(r) by about 0.15 t(r). This asymmetry produces a deeper minimum in the REDOR dephasing curve and enables complete suppression of the undesired signals of immobile segments. Residual signals of mobile sidechains are positively identified by dynamics editing using recoupled (13)C-(1)H dipolar dephasing. In all three experiments, the signals of carbons within a three-bond distance from the selected carbons are detected in the second spectral dimension via (13)C spin exchange. The efficiencies of these spectral editing techniques range from 60 % for the COO and dynamic selection experiments to 25 % for the CH selection experiment, and are demonstrated on well-characterized model proteins GB1 and ubiquitin.

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Year:  2012        PMID: 23053913      PMCID: PMC3656487          DOI: 10.1007/s10858-012-9676-8

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  32 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-23       Impact factor: 11.205

3.  Amino-acid selective experiments on uniformly 13C and 15N labeled proteins by MAS NMR: Filtering of lysines and arginines.

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Journal:  J Magn Reson       Date:  2006-09-20       Impact factor: 2.229

4.  Conformational disorder of membrane peptides investigated from solid-state NMR line widths and line shapes.

Authors:  Yongchao Su; Mei Hong
Journal:  J Phys Chem B       Date:  2011-08-18       Impact factor: 2.991

5.  Dynamic nuclear polarization-enhanced solid-state NMR of a 13C-labeled signal peptide bound to lipid-reconstituted Sec translocon.

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Review 6.  Solid-state NMR studies of amyloid fibril structure.

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Journal:  Annu Rev Phys Chem       Date:  2011       Impact factor: 12.703

7.  Methylene spectral editing in solid-state 13C NMR by three-spin coherence selection.

Authors:  J-D Mao; K Schmidt-Rohr
Journal:  J Magn Reson       Date:  2005-09       Impact factor: 2.229

8.  Nitrogen-bonded aromatics in soil organic matter and their implications for a yield decline in intensive rice cropping.

Authors:  K Schmidt-Rohr; J-D Mao; D C Olk
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9.  Chemical shift referencing in MAS solid state NMR.

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  12 in total

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Journal:  J Biomol NMR       Date:  2016-01-19       Impact factor: 2.835

2.  Practical use of chemical shift databases for protein solid-state NMR: 2D chemical shift maps and amino-acid assignment with secondary-structure information.

Authors:  K J Fritzsching; Y Yang; K Schmidt-Rohr; Mei Hong
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Review 3.  Hidden motions and motion-induced invisibility: Dynamics-based spectral editing in solid-state NMR.

Authors:  Irina Matlahov; Patrick C A van der Wel
Journal:  Methods       Date:  2018-04-24       Impact factor: 3.608

4.  De novo resonance assignment of the transmembrane domain of LR11/SorLA in E. coli membranes.

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Journal:  J Magn Reson       Date:  2019-11-01       Impact factor: 2.229

Review 5.  Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants.

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6.  Combination of ¹⁵N reverse labeling and afterglow spectroscopy for assigning membrane protein spectra by magic-angle-spinning solid-state NMR: application to the multidrug resistance protein EmrE.

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Journal:  J Biomol NMR       Date:  2013-03-29       Impact factor: 2.835

7.  Site-specific resolution of anionic residues in proteins using solid-state NMR spectroscopy.

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8.  Aromatic spectral editing techniques for magic-angle-spinning solid-state NMR spectroscopy of uniformly (13)C-labeled proteins.

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Journal:  Solid State Nucl Magn Reson       Date:  2015-09-14       Impact factor: 2.293

9.  2H-13C correlation solid-state NMR for investigating dynamics and water accessibilities of proteins and carbohydrates.

Authors:  Martin D Gelenter; Tuo Wang; Shu-Yu Liao; Hugh O'Neill; Mei Hong
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10.  Asymmetric protonation of glutamate residues drives a preferred transport pathway in EmrE.

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Journal:  Proc Natl Acad Sci U S A       Date:  2021-10-12       Impact factor: 11.205

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