Literature DB >> 23045635

Active, motor-driven mechanics in a DNA gel.

Olivier J N Bertrand1, Deborah Kuchnir Fygenson, Omar A Saleh.   

Abstract

Cells are capable of a variety of dramatic stimuli-responsive mechanical behaviors. These capabilities are enabled by the pervading cytoskeletal network, an active gel composed of structural filaments (e.g., actin) that are acted upon by motor proteins (e.g., myosin). Here, we describe the synthesis and characterization of an active gel using noncytoskeletal components. We use methods of base-pair-templated DNA self assembly to create a hybrid DNA gel containing stiff tubes and flexible linkers. We then activate the gel by adding the motor FtsK50C, a construct derived from the bacterial protein FtsK that, in vitro, has a strong and processive DNA contraction activity. The motors stiffen the gel and create stochastic contractile events that affect the positions of attached beads. We quantify the fluctuations of the beads and show that they are comparable both to measurements of cytoskeletal systems and to theoretical predictions for active gels. Thus, we present a DNA-based active gel whose behavior highlights the universal aspects of nonequilibrium, motor-driven networks.

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Year:  2012        PMID: 23045635      PMCID: PMC3491515          DOI: 10.1073/pnas.1208732109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  FtsK Is a DNA motor protein that activates chromosome dimer resolution by switching the catalytic state of the XerC and XerD recombinases.

Authors:  Laurent Aussel; François Xavier Barre; Mira Aroyo; Andrzej Stasiak; Alicja Z Stasiak; David Sherratt
Journal:  Cell       Date:  2002-01-25       Impact factor: 41.582

Review 2.  FtsK DNA translocase: the fast motor that knows where it's going.

Authors:  Estelle Crozat; Ian Grainge
Journal:  Chembiochem       Date:  2010-11-02       Impact factor: 3.164

3.  Nonequilibrium mechanics and dynamics of motor-activated gels.

Authors:  F C MacKintosh; A J Levine
Journal:  Phys Rev Lett       Date:  2008-01-08       Impact factor: 9.161

4.  The mechanics and fluctuation spectrum of active gels.

Authors:  Alex J Levine; F C MacKintosh
Journal:  J Phys Chem B       Date:  2009-03-26       Impact factor: 2.991

Review 5.  Active cellular materials.

Authors:  Frederick C Mackintosh; Christoph F Schmidt
Journal:  Curr Opin Cell Biol       Date:  2010-01-19       Impact factor: 8.382

6.  FtsK is a bifunctional protein involved in cell division and chromosome localization in Escherichia coli.

Authors:  G Liu; G C Draper; W D Donachie
Journal:  Mol Microbiol       Date:  1998-08       Impact factor: 3.501

7.  Capping of surface receptors and concomitant cortical tension are generated by conventional myosin.

Authors:  C Pasternak; J A Spudich; E L Elson
Journal:  Nature       Date:  1989-10-12       Impact factor: 49.962

8.  Persistent, directional motility of cells and cytoplasmic fragments in the absence of microtubules.

Authors:  U Euteneuer; M Schliwa
Journal:  Nature       Date:  1984 Jul 5-11       Impact factor: 49.962

9.  Fast, DNA-sequence independent translocation by FtsK in a single-molecule experiment.

Authors:  Omar A Saleh; Corine Pérals; François-Xavier Barre; Jean-François Allemand
Journal:  EMBO J       Date:  2004-05-27       Impact factor: 11.598

10.  The FtsK gamma domain directs oriented DNA translocation by interacting with KOPS.

Authors:  Viknesh Sivanathan; Mark D Allen; Charissa de Bekker; Rachel Baker; Lidia K Arciszewska; Stefan M Freund; Mark Bycroft; Jan Löwe; David J Sherratt
Journal:  Nat Struct Mol Biol       Date:  2006-10-22       Impact factor: 15.369

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  7 in total

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Journal:  Biophys J       Date:  2019-06-18       Impact factor: 4.033

2.  Enzymatic degradation of liquid droplets of DNA is modulated near the phase boundary.

Authors:  Omar A Saleh; Byoung-Jin Jeon; Tim Liedl
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-29       Impact factor: 11.205

3.  Biophysical characterization of organelle-based RNA/protein liquid phases using microfluidics.

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4.  Coordinated motion of molecular motors on DNA chains with branch topology.

Authors:  Di Lu; Bin Chen
Journal:  Acta Mech Sin       Date:  2022-02-16       Impact factor: 2.910

5.  Synthetic circuit for exact adaptation and fold-change detection.

Authors:  Jongmin Kim; Ishan Khetarpal; Shaunak Sen; Richard M Murray
Journal:  Nucleic Acids Res       Date:  2014-04-11       Impact factor: 16.971

6.  Programmed mechano-chemical coupling in reaction-diffusion active matter.

Authors:  Anis Senoussi; Jean-Christophe Galas; André Estevez-Torres
Journal:  Sci Adv       Date:  2021-12-17       Impact factor: 14.136

7.  T7 RNA polymerase non-specifically transcribes and induces disassembly of DNA nanostructures.

Authors:  Samuel W Schaffter; Leopold N Green; Joanna Schneider; Hari K K Subramanian; Rebecca Schulman; Elisa Franco
Journal:  Nucleic Acids Res       Date:  2018-06-01       Impact factor: 16.971

  7 in total

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