Literature DB >> 35601132

Coordinated motion of molecular motors on DNA chains with branch topology.

Di Lu1, Bin Chen1,2.   

Abstract

To understand the macroscopic mechanical behaviors of responsive DNA hydrogels integrated with DNA motors, we constructed a state map for the translocation process of a single FtsKC on a single DNA chain at the molecular level and then investigated the movement of single or multiple FtsKC motors on DNA chains with varied branch topologies. Our studies indicate that multiple FtsKC motors can have coordinated motion, which is mainly due to the force-responsive behavior of individual FtsKC motors. We further suggest the potential application of motors of FtsKC, together with DNA chains of specific branch topology, to serve as strain sensors in hydrogels. © The Chinese Society of Theoretical and Applied Mechanics and Springer-Verlag GmbH Germany, part of Springer Nature 2022.

Entities:  

Keywords:  Branch topology; Coordinated motion; DNA; Molecular motor; Strain sensor

Year:  2022        PMID: 35601132      PMCID: PMC9109741          DOI: 10.1007/s10409-021-09045-x

Source DB:  PubMed          Journal:  Acta Mech Sin        ISSN: 0567-7718            Impact factor:   2.910


  30 in total

Review 1.  The Escherichia coli DNA translocase FtsK.

Authors:  David J Sherratt; Lidia K Arciszewska; Estelle Crozat; James E Graham; Ian Grainge
Journal:  Biochem Soc Trans       Date:  2010-04       Impact factor: 5.407

2.  A study of DNA tube formation mechanisms using 4-, 8-, and 12-helix DNA nanostructures.

Authors:  Yonggang Ke; Yan Liu; Junping Zhang; Hao Yan
Journal:  J Am Chem Soc       Date:  2006-04-05       Impact factor: 15.419

3.  Oriented loading of FtsK on KOPS.

Authors:  Sarah Bigot; Omar A Saleh; François Cornet; Jean-François Allemand; François-Xavier Barre
Journal:  Nat Struct Mol Biol       Date:  2006-10-15       Impact factor: 15.369

4.  Single-molecule imaging of FtsK translocation reveals mechanistic features of protein-protein collisions on DNA.

Authors:  Ja Yil Lee; Ilya J Finkelstein; Lidia K Arciszewska; David J Sherratt; Eric C Greene
Journal:  Mol Cell       Date:  2014-04-24       Impact factor: 17.970

5.  Mapping viscosity in cells using molecular rotors.

Authors:  Marina K Kuimova
Journal:  Phys Chem Chem Phys       Date:  2012-10-05       Impact factor: 3.676

6.  Smart Bilayer Polyacrylamide/DNA Hybrid Hydrogel Film Actuators Exhibiting Programmable Responsive and Reversible Macroscopic Shape Deformations.

Authors:  Yanhui Bi; Xiaoxue Du; Pingping He; Chunyan Wang; Chang Liu; Weiwei Guo
Journal:  Small       Date:  2020-09-28       Impact factor: 13.281

7.  DNA Tetrahedra-Cross-linked Hydrogel Functionalized Paper for Onsite Analysis of DNA Methyltransferase Activity Using a Personal Glucose Meter.

Authors:  Xin Gao; Xiuyuan Li; Xinzhi Sun; Jingyan Zhang; Yuecan Zhao; Xiaojuan Liu; Feng Li
Journal:  Anal Chem       Date:  2020-03-04       Impact factor: 6.986

8.  DNA-directed self-assembly of shape-controlled hydrogels.

Authors:  Hao Qi; Majid Ghodousi; Yanan Du; Casey Grun; Hojae Bae; Peng Yin; Ali Khademhosseini
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

9.  FtsK translocation on DNA stops at XerCD-dif.

Authors:  James E Graham; Viknesh Sivanathan; David J Sherratt; Lidia K Arciszewska
Journal:  Nucleic Acids Res       Date:  2009-10-23       Impact factor: 16.971

10.  Microrheology of DNA hydrogels.

Authors:  Zhongyang Xing; Alessio Caciagli; Tianyang Cao; Iliya Stoev; Mykolas Zupkauskas; Thomas O'Neill; Tobias Wenzel; Robin Lamboll; Dongsheng Liu; Erika Eiser
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-25       Impact factor: 11.205

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