Literature DB >> 23045511

Complete genome sequence of Methylocystis sp. strain SC2, an aerobic methanotroph with high-affinity methane oxidation potential.

Bomba Dam1, Somasri Dam, Michael Kube, Richard Reinhardt, Werner Liesack.   

Abstract

Methylocystis sp. strain SC2 is an aerobic type II methanotroph isolated from a highly polluted aquifer in Germany. A specific trait of the SC2 strain is the expression of two isozymes of particulate methane monooxygenase with different methane oxidation kinetics. Here we report the complete genome sequence of this methanotroph that contains not only a circular chromosome but also two large plasmids.

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Year:  2012        PMID： 23045511      PMCID： PMC3486114          DOI： 10.1128/JB.01446-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  16 in total

1.  Detection of methanotroph diversity on roots of submerged rice plants by molecular retrieval of pmoA, mmoX, mxaF, and 16S rRNA and ribosomal DNA, including pmoA-based terminal restriction fragment length polymorphism profiling.

Authors:  H P Horz; M T Yimga; W Liesack
Journal:  Appl Environ Microbiol       Date:  2001-09       Impact factor: 4.792

2.  Identification of active methylotroph populations in an acidic forest soil by stable-isotope probing.

Authors:  Stefan Radajewski; Gordon Webster; David S Reay; Samantha A Morris; Philip Ineson; David B Nedwell; James I Prosser; J Colin Murrell
Journal:  Microbiology       Date:  2002-08       Impact factor: 2.777

3.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

4.  Ammonia cometabolism and product inhibition vary considerably among species of methanotrophic bacteria.

Authors:  Györgyi Nyerges; Lisa Y Stein
Journal:  FEMS Microbiol Lett       Date:  2009-06-03       Impact factor: 2.742

5.  A comparison of methanobactins from Methylosinus trichosporium OB3b and Methylocystis strain Sb2 predicts methanobactins are synthesized from diverse peptide precursors modified to create a common core for binding and reducing copper ions.

Authors:  Benjamin D Krentz; Heidi J Mulheron; Jeremy D Semrau; Alan A Dispirito; Nathan L Bandow; Daniel H Haft; Stéphane Vuilleumier; J Colin Murrell; Marcus T McEllistrem; Scott C Hartsel; Warren H Gallagher
Journal:  Biochemistry       Date:  2010-11-04       Impact factor: 3.162

6.  Effects of ammonium and nitrite on growth and competitive fitness of cultivated methanotrophic bacteria.

Authors:  Györgyi Nyerges; Suk-Kyun Han; Lisa Y Stein
Journal:  Appl Environ Microbiol       Date:  2010-07-02       Impact factor: 4.792

7.  Microaerobic and anaerobic metabolism of a Methylocystis parvus strain isolated from a denitrifying bioreactor.

Authors:  Margarita Vecherskaya; Cor Dijkema; Hugo Ramírez Saad; Alfons J M Stams
Journal:  Environ Microbiol Rep       Date:  2009-08-24       Impact factor: 3.541

8.  Acetate utilization as a survival strategy of peat-inhabiting Methylocystis spp.

Authors:  Svetlana E Belova; Mohamed Baani; Natalia E Suzina; Paul L E Bodelier; Werner Liesack; Svetlana N Dedysh
Journal:  Environ Microbiol Rep       Date:  2011-02       Impact factor: 3.541

9.  Comparative analysis of the conventional and novel pmo (particulate methane monooxygenase) operons from methylocystis strain SC2.

Authors:  Peter Ricke; Christoph Erkel; Michael Kube; Richard Reinhardt; Werner Liesack
Journal:  Appl Environ Microbiol       Date:  2004-05       Impact factor: 4.792

10.  Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SC2.

Authors:  Mohamed Baani; Werner Liesack
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-15       Impact factor: 11.205
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  17 in total

1.  Microbial minorities modulate methane consumption through niche partitioning.

Authors:  Paul L E Bodelier; Marion Meima-Franke; Cornelis A Hordijk; Anne K Steenbergh; Mariet M Hefting; Levente Bodrossy; Martin von Bergen; Jana Seifert
Journal:  ISME J       Date:  2013-06-20       Impact factor: 10.302

2.  Response of Methylocystis sp. Strain SC2 to Salt Stress: Physiology, Global Transcriptome, and Amino Acid Profiles.

Authors:  Dongfei Han; Hannes Link; Werner Liesack
Journal:  Appl Environ Microbiol       Date:  2017-09-29       Impact factor: 4.792

3.  Dark Diazotrophy during the Late Summer in Surface Waters of Chile Bay, West Antarctic Peninsula.

Authors:  María E Alcamán-Arias; Jerónimo Cifuentes-Anticevic; Wilson Castillo-Inaipil; Laura Farías; Cynthia Sanhueza; Beatriz Fernández-Gómez; Josefa Verdugo; Leslie Abarzua; Christina Ridley; Javier Tamayo-Leiva; Beatriz Díez
Journal:  Microorganisms       Date:  2022-05-31

4.  SmoXYB1C1Z of Mycobacterium sp. strain NBB4: a soluble methane monooxygenase (sMMO)-like enzyme, active on C2 to C4 alkanes and alkenes.

Authors:  Kiri E Martin; Jazmin Ozsvar; Nicholas V Coleman
Journal:  Appl Environ Microbiol       Date:  2014-07-11       Impact factor: 4.792

5.  The (d)evolution of methanotrophy in the Beijerinckiaceae--a comparative genomics analysis.

Authors:  Ivica Tamas; Angela V Smirnova; Zhiguo He; Peter F Dunfield
Journal:  ISME J       Date:  2013-08-29       Impact factor: 10.302

6.  Global Molecular Analyses of Methane Metabolism in Methanotrophic Alphaproteobacterium, Methylosinus trichosporium OB3b. Part I: Transcriptomic Study.

Authors:  Janet B Matsen; Song Yang; Lisa Y Stein; David Beck; Marina G Kalyuzhnaya
Journal:  Front Microbiol       Date:  2013-04-03       Impact factor: 5.640

7.  Genome mining for methanobactins.

Authors:  Grace E Kenney; Amy C Rosenzweig
Journal:  BMC Biol       Date:  2013-02-26       Impact factor: 7.431

8.  Genome analysis coupled with physiological studies reveals a diverse nitrogen metabolism in Methylocystis sp. strain SC2.

Authors:  Bomba Dam; Somasri Dam; Jochen Blom; Werner Liesack
Journal:  PLoS One       Date:  2013-10-10       Impact factor: 3.240

9.  Microbial community analysis of a methane-producing biocathode in a bioelectrochemical system.

Authors:  Mieke C A A Van Eerten-Jansen; Anna B Veldhoen; Caroline M Plugge; Alfons J M Stams; Cees J N Buisman; Annemiek Ter Heijne
Journal:  Archaea       Date:  2013-09-25       Impact factor: 3.273

10.  Evolution of mitochondria reconstructed from the energy metabolism of living bacteria.

Authors:  Mauro Degli Esposti; Bessem Chouaia; Francesco Comandatore; Elena Crotti; Davide Sassera; Patricia Marie-Jeanne Lievens; Daniele Daffonchio; Claudio Bandi
Journal:  PLoS One       Date:  2014-05-07       Impact factor: 3.240
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