Literature DB >> 23045490

Draft genome sequence of Lactobacillus gigeriorum CRBIP 24.85T, isolated from a chicken crop.

Sylvie Cousin1, Laurence Ma, Sophie Creno, Dominique Clermont, Valentin Loux, Chantal Bizet, Christiane Bouchier.   

Abstract

We report the draft genome of the strain Lactobacillus gigeriorum CRBIP 24.85(T), isolated from a chicken crop. The total length of the 60 scaffolds is about 1.9 Mb, with a GC content of 38% and 2,062 protein-coding sequences (CDS).

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Year:  2012        PMID： 23045490      PMCID： PMC3486101          DOI： 10.1128/JB.01427-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

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2.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

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3.  ABySS: a parallel assembler for short read sequence data.

Authors:  Jared T Simpson; Kim Wong; Shaun D Jackman; Jacqueline E Schein; Steven J M Jones; Inanç Birol
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4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Specific establishment of lactobacilli in the digestive tract of germ-free chickens.

Authors:  Y Morishita; T Mitsuoka; C Kaneuchi; S Yamamoto; M Ogata
Journal:  Jpn J Microbiol       Date:  1971-11

6.  Lactobacillus gigeriorum sp. nov., isolated from chicken crop.

Authors:  Sylvie Cousin; Marie-Laure Gulat-Okalla; Laurence Motreff; Catherine Gouyette; Christiane Bouchier; Dominique Clermont; Chantal Bizet
Journal:  Int J Syst Evol Microbiol       Date:  2011-03-18       Impact factor: 2.747

7.  Lactobacillus kitasatonis sp. nov., from chicken intestine.

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Journal:  Int J Syst Evol Microbiol       Date:  2003-11       Impact factor: 2.747

8.  Lactobacillus thermotolerans sp. nov., a novel thermotolerant species isolated from chicken faeces.

Authors:  Piyanuch Niamsup; I Nengah Sujaya; Michiko Tanaka; Teruo Sone; Satoshi Hanada; Yoichi Kamagata; Saisamorn Lumyong; Apinya Assavanig; Kozo Asano; Fusao Tomita; Atsushi Yokota
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9.  AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system.

Authors:  K Bryson; V Loux; R Bossy; P Nicolas; S Chaillou; M van de Guchte; S Penaud; E Maguin; M Hoebeke; P Bessières; J-F Gibrat
Journal:  Nucleic Acids Res       Date:  2006-07-19       Impact factor: 16.971

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

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Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
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