Literature DB >> 12773618

Direct observation of photolysis-induced tertiary structural changes in hemoglobin.

Shin-Ichi Adachi1, Sam-Yong Park, Jeremy R H Tame, Yoshitsugu Shiro, Naoya Shibayama.   

Abstract

Human Hb, an alpha2beta2 tetrameric oxygen transport protein that switches from a T (tense) to an R (relaxed) quaternary structure during oxygenation, has long served as a model for studying protein allostery in general. Time-resolved spectroscopic measurements after photodissociation of CO-liganded Hb have played a central role in exploring both protein dynamical responses and molecular cooperativity, but the direct visualization and the structural consequences of photodeligation have not yet been reported. Here we present an x-ray study of structural changes induced by photodissociation of half-liganded T-state and fully liganded R-state human Hb at cryogenic temperatures (25-35 K). On photodissociation of CO, structural changes involving the heme and the F-helix are more marked in the alpha subunit than in the beta subunit, and more subtle in the R state than in the T state. Photodeligation causes a significant sliding motion of the T-state beta heme. Our results establish that the structural basis of the low affinity of the T state is radically different between the subunits, because of differences in the packing and chemical tension at the hemes.

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Year:  2003        PMID: 12773618      PMCID: PMC165826          DOI: 10.1073/pnas.1230629100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

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Journal:  J Biol Chem       Date:  1986-07-25       Impact factor: 5.157

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Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

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Journal:  Q Rev Biophys       Date:  1989-05       Impact factor: 5.318

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Journal:  Science       Date:  1995-09-29       Impact factor: 47.728

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Journal:  Biochemistry       Date:  1984-06-19       Impact factor: 3.162

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Journal:  J Biol Chem       Date:  1985-11-15       Impact factor: 5.157

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Journal:  J Mol Biol       Date:  1990-06-20       Impact factor: 5.469

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Journal:  Biochem Biophys Res Commun       Date:  1988-10-14       Impact factor: 3.575

10.  The porphyrin-iron hybrid hemoglobins. Absence of the Fe-His bonds in one type of subunits favors a deoxy-like structure with low oxygen affinity.

Authors:  M Fujii; H Hori; G Miyazaki; H Morimoto; T Yonetani
Journal:  J Biol Chem       Date:  1993-07-25       Impact factor: 5.157

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  21 in total

1.  An atomistic view on human hemoglobin carbon monoxide migration processes.

Authors:  M Fátima Lucas; Víctor Guallar
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

2.  Structure of an extracellular giant hemoglobin of the gutless beard worm Oligobrachia mashikoi.

Authors:  Nobutaka Numoto; Taro Nakagawa; Akiko Kita; Yuichi Sasayama; Yoshihiro Fukumori; Kunio Miki
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-03       Impact factor: 11.205

3.  Allosteric action in real time: time-resolved crystallographic studies of a cooperative dimeric hemoglobin.

Authors:  James E Knapp; Reinhard Pahl; Vukica Srajer; William E Royer
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-09       Impact factor: 11.205

4.  A quantum-chemical picture of hemoglobin affinity.

Authors:  R E Alcantara; C Xu; T G Spiro; V Guallar
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-14       Impact factor: 11.205

5.  Heme reactivity is uncoupled from quaternary structure in gel-encapsulated hemoglobin: a resonance Raman spectroscopic study.

Authors:  Eric M Jones; Gurusamy Balakrishnan; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2012-02-09       Impact factor: 15.419

6.  Effect of Occluded Ligand Migration on the Kinetics and Structural Dynamics of Homodimeric Hemoglobin.

Authors:  Hanui Kim; Jong Goo Kim; Srinivasan Muniyappan; Tae Wu Kim; Sang Jin Lee; Hyotcherl Ihee
Journal:  J Phys Chem B       Date:  2020-02-19       Impact factor: 2.991

7.  Deer mouse hemoglobin exhibits a lowered oxygen affinity owing to mobility of the E helix.

Authors:  Noriko Inoguchi; Jake R Oshlo; Chandrasekhar Natarajan; Roy E Weber; Angela Fago; Jay F Storz; Hideaki Moriyama
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-03-28

8.  Modulating distal cavities in the α and β subunits of human HbA reveals the primary ligand migration pathway.

Authors:  Ivan Birukou; David H Maillett; Anastasiya Birukova; John S Olson
Journal:  Biochemistry       Date:  2011-08-08       Impact factor: 3.162

9.  Discrimination between CO and O(2) in heme oxygenase: comparison of static structures and dynamic conformation changes following CO photolysis.

Authors:  Masakazu Sugishima; Keith Moffat; Masato Noguchi
Journal:  Biochemistry       Date:  2012-10-18       Impact factor: 3.162

10.  Molecular dynamics simulations of hemoglobin A in different states and bound to DPG: effector-linked perturbation of tertiary conformations and HbA concerted dynamics.

Authors:  Monique Laberge; Takashi Yonetani
Journal:  Biophys J       Date:  2007-12-20       Impact factor: 4.033

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