Literature DB >> 23040499

Cross-reactive DNA microarray probes lead to false discovery of autosomal sex-associated DNA methylation.

Yi-an Chen, Sanaa Choufani, Daria Grafodatskaya, Darci T Butcher, Jose C Ferreira, Rosanna Weksberg.   

Abstract

Mesh:

Year:  2012        PMID: 23040499      PMCID: PMC3484480          DOI: 10.1016/j.ajhg.2012.06.020

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


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  8 in total

1.  Sequence overlap between autosomal and sex-linked probes on the Illumina HumanMethylation27 microarray.

Authors:  Yi-an Chen; Sanaa Choufani; Jose Carlos Ferreira; Daria Grafodatskaya; Darci T Butcher; Rosanna Weksberg
Journal:  Genomics       Date:  2011-01-04       Impact factor: 5.736

2.  DNA methylation signatures in development and aging of the human prefrontal cortex.

Authors:  Shusuke Numata; Tianzhang Ye; Thomas M Hyde; Xavier Guitart-Navarro; Ran Tao; Michael Wininger; Carlo Colantuoni; Daniel R Weinberger; Joel E Kleinman; Barbara K Lipska
Journal:  Am J Hum Genet       Date:  2012-02-02       Impact factor: 11.025

3.  Sex differential in methylation patterns of selected genes in Singapore Chinese.

Authors:  Barbara Sarter; Tiffany I Long; Wan H Tsong; Woon-Puay Koh; Mimi C Yu; Peter W Laird
Journal:  Hum Genet       Date:  2005-06-01       Impact factor: 4.132

4.  Gender specific differences in levels of DNA methylation at selected loci from human total blood: a tendency toward higher methylation levels in males.

Authors:  Osman El-Maarri; Tim Becker; Judith Junen; Syed Saadi Manzoor; Amalia Diaz-Lacava; Rainer Schwaab; Thomas Wienker; Johannes Oldenburg
Journal:  Hum Genet       Date:  2007-09-13       Impact factor: 4.132

5.  Racial differences in gene-specific DNA methylation levels are present at birth.

Authors:  Ronald M Adkins; Julia Krushkal; Frances A Tylavsky; Fridtjof Thomas
Journal:  Birth Defects Res A Clin Mol Teratol       Date:  2011-02-09

6.  A study of the influence of sex on genome wide methylation.

Authors:  Jingyu Liu; Marilee Morgan; Kent Hutchison; Vince D Calhoun
Journal:  PLoS One       Date:  2010-04-06       Impact factor: 3.240

7.  Chromosome-wide DNA methylation analysis predicts human tissue-specific X inactivation.

Authors:  Allison M Cotton; Lucia Lam; Joslynn G Affleck; Ian M Wilson; Maria S Peñaherrera; Deborah E McFadden; Michael S Kobor; Wan L Lam; Wendy P Robinson; Carolyn J Brown
Journal:  Hum Genet       Date:  2011-05-20       Impact factor: 4.132

8.  Parental ages and levels of DNA methylation in the newborn are correlated.

Authors:  Ronald M Adkins; Fridtjof Thomas; Frances A Tylavsky; Julia Krushkal
Journal:  BMC Med Genet       Date:  2011-03-31       Impact factor: 2.103

  8 in total
  16 in total

1.  Improved reporting of DNA methylation data derived from studies of the human placenta.

Authors:  Kirsten Hogg; E Magda Price; Wendy P Robinson
Journal:  Epigenetics       Date:  2014-01-06       Impact factor: 4.528

2.  Hypoxia alters the epigenetic profile in cultured human placental trophoblasts.

Authors:  Ryan K C Yuen; Baosheng Chen; John D Blair; Wendy P Robinson; D Michael Nelson
Journal:  Epigenetics       Date:  2013-01-11       Impact factor: 4.528

3.  Seroepidemiology of Human Polyomaviruses in a US Population.

Authors:  Anala Gossai; Tim Waterboer; Heather H Nelson; Angelika Michel; Martina Willhauck-Fleckenstein; Shohreh F Farzan; Anne G Hoen; Brock C Christensen; Karl T Kelsey; Carmen J Marsit; Michael Pawlita; Margaret R Karagas
Journal:  Am J Epidemiol       Date:  2015-12-13       Impact factor: 4.897

4.  Meta-analysis of human methylation data for evidence of sex-specific autosomal patterns.

Authors:  Nina S McCarthy; Phillip E Melton; Gemma Cadby; Seyhan Yazar; Maria Franchina; Eric K Moses; David A Mackey; Alex W Hewitt
Journal:  BMC Genomics       Date:  2014-11-18       Impact factor: 3.969

5.  Genome-wide investigation of DNA methylation marks associated with FV Leiden mutation.

Authors:  Dylan Aïssi; Jessica Dennis; Martin Ladouceur; Vinh Truong; Nora Zwingerman; Ares Rocanin-Arjo; Marine Germain; Tara A Paton; Pierre-Emmanuel Morange; France Gagnon; David-Alexandre Trégouët
Journal:  PLoS One       Date:  2014-09-29       Impact factor: 3.240

6.  CHARGE and Kabuki Syndromes: Gene-Specific DNA Methylation Signatures Identify Epigenetic Mechanisms Linking These Clinically Overlapping Conditions.

Authors:  Darci T Butcher; Cheryl Cytrynbaum; Andrei L Turinsky; Michelle T Siu; Michal Inbar-Feigenberg; Roberto Mendoza-Londono; David Chitayat; Susan Walker; Jerry Machado; Oana Caluseriu; Lucie Dupuis; Daria Grafodatskaya; William Reardon; Brigitte Gilbert-Dussardier; Alain Verloes; Frederic Bilan; Jeff M Milunsky; Raveen Basran; Blake Papsin; Tracy L Stockley; Stephen W Scherer; Sanaa Choufani; Michael Brudno; Rosanna Weksberg
Journal:  Am J Hum Genet       Date:  2017-05-04       Impact factor: 11.025

7.  Evaluating human autosomal loci for sexually antagonistic viability selection in two large biobanks.

Authors:  Katja R Kasimatis; Abin Abraham; Peter L Ralph; Andrew D Kern; John A Capra; Patrick C Phillips
Journal:  Genetics       Date:  2021-03-03       Impact factor: 4.562

8.  Genome-wide methylation patterns provide insight into differences in breast tumor biology between American women of African and European ancestry.

Authors:  Christine B Ambrosone; Allyson C Young; Lara E Sucheston; Dan Wang; Li Yan; Song Liu; Li Tang; Qiang Hu; Jo L Freudenheim; Peter G Shields; Carl D Morrison; Kitaw Demissie; Michael J Higgins
Journal:  Oncotarget       Date:  2014-01-15

9.  Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling.

Authors:  Ruth Pidsley; Elena Zotenko; Timothy J Peters; Mitchell G Lawrence; Gail P Risbridger; Peter Molloy; Susan Van Djik; Beverly Muhlhausler; Clare Stirzaker; Susan J Clark
Journal:  Genome Biol       Date:  2016-10-07       Impact factor: 13.583

10.  A cross-cohort analysis of autosomal DNA methylation sex differences in the term placenta.

Authors:  Amy M Inkster; Victor Yuan; Chaini Konwar; Allison M Matthews; Carolyn J Brown; Wendy P Robinson
Journal:  Biol Sex Differ       Date:  2021-05-27       Impact factor: 5.027

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