Literature DB >> 23038398

Maximum precision closed-form solution for localizing diffraction-limited spots in noisy images.

Joshua D Larkin1, Peter R Cook.   

Abstract

Super-resolution techniques like PALM and STORM require accurate localization of single fluorophores detected using a CCD. Popular localization algorithms inefficiently assume each photon registered by a pixel can only come from an area in the specimen corresponding to that pixel (not from neighboring areas), before iteratively (slowly) fitting a Gaussian to pixel intensity; they fail with noisy images. We present an alternative; a probability distribution extending over many pixels is assigned to each photon, and independent distributions are joined to describe emitter location. We compare algorithms, and recommend which serves best under different conditions. At low signal-to-noise ratios, ours is 2-fold more precise than others, and 2 orders of magnitude faster; at high ratios, it closely approximates the maximum likelihood estimate.

Entities:  

Mesh:

Year:  2012        PMID: 23038398      PMCID: PMC3503144          DOI: 10.1364/OE.20.018478

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  19 in total

1.  Quantitative comparison of algorithms for tracking single fluorescent particles.

Authors:  M K Cheezum; W F Walker; W H Guilford
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

2.  Precise nanometer localization analysis for individual fluorescent probes.

Authors:  Russell E Thompson; Daniel R Larson; Watt W Webb
Journal:  Biophys J       Date:  2002-05       Impact factor: 4.033

3.  Localization accuracy in single-molecule microscopy.

Authors:  Raimund J Ober; Sripad Ram; E Sally Ward
Journal:  Biophys J       Date:  2004-02       Impact factor: 4.033

4.  Super-resolution imaging visualizes the eightfold symmetry of gp210 proteins around the nuclear pore complex and resolves the central channel with nanometer resolution.

Authors:  Anna Löschberger; Sebastian van de Linde; Marie-Christine Dabauvalle; Bernd Rieger; Mike Heilemann; Georg Krohne; Markus Sauer
Journal:  J Cell Sci       Date:  2012-02-01       Impact factor: 5.285

5.  Real-time computation of subdiffraction-resolution fluorescence images.

Authors:  S Wolter; M Schüttpelz; M Tscherepanow; S VAN DE Linde; M Heilemann; M Sauer
Journal:  J Microsc       Date:  2010-01       Impact factor: 1.758

6.  Fast, bias-free algorithm for tracking single particles with variable size and shape.

Authors:  Andrew J Berglund; Matthew D McMahon; Jabez J McClelland; J Alexander Liddle
Journal:  Opt Express       Date:  2008-09-01       Impact factor: 3.894

7.  Online image analysis software for photoactivation localization microscopy.

Authors:  Per Niklas Hedde; Jochen Fuchs; Franz Oswald; Jörg Wiedenmann; Gerd Ulrich Nienhaus
Journal:  Nat Methods       Date:  2009-10       Impact factor: 28.547

8.  DAOSTORM: an algorithm for high- density super-resolution microscopy.

Authors:  Seamus J Holden; Stephan Uphoff; Achillefs N Kapanidis
Journal:  Nat Methods       Date:  2011-04       Impact factor: 28.547

9.  Active RNA polymerases: mobile or immobile molecular machines?

Authors:  Argyris Papantonis; Joshua D Larkin; Youichiro Wada; Yoshihiro Ohta; Sigeo Ihara; Tatsuhiko Kodama; Peter R Cook
Journal:  PLoS Biol       Date:  2010-07-13       Impact factor: 8.029

10.  Similar active genes cluster in specialized transcription factories.

Authors:  Meng Xu; Peter R Cook
Journal:  J Cell Biol       Date:  2008-05-19       Impact factor: 10.539

View more
  5 in total

Review 1.  Single-molecule detection and tracking in plants.

Authors:  Markus Langhans; Tobias Meckel
Journal:  Protoplasma       Date:  2014-01-03       Impact factor: 3.356

2.  TNFα signals through specialized factories where responsive coding and miRNA genes are transcribed.

Authors:  Argyris Papantonis; Takahide Kohro; Sabyasachi Baboo; Joshua D Larkin; Binwei Deng; Patrick Short; Shuichi Tsutsumi; Stephen Taylor; Yasuharu Kanki; Mika Kobayashi; Guoliang Li; Huay-Mei Poh; Xiaoan Ruan; Hiroyuki Aburatani; Yijun Ruan; Tatsuhiko Kodama; Youichiro Wada; Peter R Cook
Journal:  EMBO J       Date:  2012-10-26       Impact factor: 11.598

3.  Promoter type influences transcriptional topography by targeting genes to distinct nucleoplasmic sites.

Authors:  Joshua D Larkin; Argyris Papantonis; Peter R Cook
Journal:  J Cell Sci       Date:  2013-02-26       Impact factor: 5.285

4.  Space exploration by the promoter of a long human gene during one transcription cycle.

Authors:  Joshua D Larkin; Argyris Papantonis; Peter R Cook; Davide Marenduzzo
Journal:  Nucleic Acids Res       Date:  2013-01-08       Impact factor: 16.971

5.  Super-resolution measurement of distance between transcription sites using RNA FISH with intronic probes.

Authors:  Joshua D Larkin; Peter R Cook
Journal:  Methods       Date:  2015-11-11       Impact factor: 3.608

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.