Literature DB >> 23034772

Prediction and control of number of cells in microdroplets by stochastic modeling.

Elvan Ceyhan1, Feng Xu, Umut Atakan Gurkan, Ahmet Emrehan Emre, Emine Sumeyra Turali, Rami El Assal, Ali Acikgenc, Chung-an Max Wu, Utkan Demirci.   

Abstract

Manipulation and encapsulation of cells in microdroplets has found many applications in various fields such as clinical diagnostics, pharmaceutical research, and regenerative medicine. The control over the number of cells in individual droplets is important especially for microfluidic and bioprinting applications. There is a growing need for modeling approaches that enable control over a number of cells within individual droplets. In this study, we developed statistical models based on negative binomial regression to determine the dependence of number of cells per droplet on three main factors: cell concentration in the ejection fluid, droplet size, and cell size. These models were based on experimental data obtained by using a microdroplet generator, where the presented statistical models estimated the number of cells encapsulated in droplets. We also propose a stochastic model for the total volume of cells per droplet. The statistical and stochastic models introduced in this study are adaptable to various cell types and cell encapsulation technologies such as microfluidic and acoustic methods that require reliable control over number of cells per droplet provided that settings and interaction of the variables is similar.

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Year:  2012        PMID: 23034772      PMCID: PMC3524309          DOI: 10.1039/c2lc40523g

Source DB:  PubMed          Journal:  Lab Chip        ISSN: 1473-0189            Impact factor:   6.799


  35 in total

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Review 2.  Multi-scale heat and mass transfer modelling of cell and tissue cryopreservation.

Authors:  Feng Xu; Sangjun Moon; Xiaohui Zhang; Lei Shao; Young Seok Song; Utkan Demirci
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3.  Quantum dot-based HIV capture and imaging in a microfluidic channel.

Authors:  Yun-Gon Kim; Sangjun Moon; Daniel R Kuritzkes; Utkan Demirci
Journal:  Biosens Bioelectron       Date:  2009-06-18       Impact factor: 10.618

4.  Blood banking in living droplets.

Authors:  Josh Samot; Sangjun Moon; Lei Shao; Xiaohui Zhang; Feng Xu; Youngseok Song; Hasan Onur Keles; Laura Matloff; Jordan Markel; Utkan Demirci
Journal:  PLoS One       Date:  2011-03-11       Impact factor: 3.240

5.  Microfluidics for cryopreservation.

Authors:  Young S Song; Sangjun Moon; Leon Hulli; Syed K Hasan; Emre Kayaalp; Utkan Demirci
Journal:  Lab Chip       Date:  2009-03-31       Impact factor: 6.799

6.  High-throughput single copy DNA amplification and cell analysis in engineered nanoliter droplets.

Authors:  Palani Kumaresan; Chaoyong James Yang; Samantha A Cronier; Robert G Blazej; Richard A Mathies
Journal:  Anal Chem       Date:  2008-04-15       Impact factor: 6.986

7.  Layer by layer three-dimensional tissue epitaxy by cell-laden hydrogel droplets.

Authors:  SangJun Moon; Syed K Hasan; Young S Song; Feng Xu; Hasan Onur Keles; Fahim Manzur; Sohan Mikkilineni; Jong Wook Hong; Jiro Nagatomi; Edward Haeggstrom; Ali Khademhosseini; Utkan Demirci
Journal:  Tissue Eng Part C Methods       Date:  2010-02       Impact factor: 3.056

8.  Integrating microfluidics and lensless imaging for point-of-care testing.

Authors:  Sangjun Moon; Hasan Onur Keles; Aydogan Ozcan; Ali Khademhosseini; Edward Haeggstrom; Daniel Kuritzkes; Utkan Demirci
Journal:  Biosens Bioelectron       Date:  2009-04-02       Impact factor: 10.618

9.  High-throughput single cell arrays as a novel tool in biopreservation.

Authors:  Kenneth L Roach; Kevin R King; Korkut Uygun; Steven C Hand; Isaac S Kohane; Martin L Yarmush; Mehmet Toner
Journal:  Cryobiology       Date:  2009-03-19       Impact factor: 2.487

10.  Nanometer- and submicrometer-sized hollow spheres of chondroitin sulfate as a potential formulation strategy for anti-inflammatory encapsulation.

Authors:  Adriano V Reis; Marcos R Guilherme; Luiz H C Mattoso; Adley F Rubira; Elias B Tambourgi; Edvani C Muniz
Journal:  Pharm Res       Date:  2008-11-13       Impact factor: 4.200

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  8 in total

Review 1.  Microfluidics-based fabrication of cell-laden microgels.

Authors:  Mohamed G A Mohamed; Pranav Ambhorkar; Roya Samanipour; Annie Yang; Ali Ghafoor; Keekyoung Kim
Journal:  Biomicrofluidics       Date:  2020-03-05       Impact factor: 2.800

2.  Bio-inspired cryo-ink preserves red blood cell phenotype and function during nanoliter vitrification.

Authors:  Rami El Assal; Sinan Guven; Umut Atakan Gurkan; Irep Gozen; Hadi Shafiee; Sedef Dalbeyler; Noor Abdalla; Gawain Thomas; Wendy Fuld; Ben M W Illigens; Jessica Estanislau; Joseph Khoory; Richard Kaufman; Claudia Zylberberg; Neal Lindeman; Qi Wen; Ionita Ghiran; Utkan Demirci
Journal:  Adv Mater       Date:  2014-07-22       Impact factor: 30.849

Review 3.  Preserving human cells for regenerative, reproductive, and transfusion medicine.

Authors:  Waseem Asghar; Rami El Assal; Hadi Shafiee; Raymond M Anchan; Utkan Demirci
Journal:  Biotechnol J       Date:  2014-07       Impact factor: 4.677

Review 4.  Bioprinting for stem cell research.

Authors:  Savas Tasoglu; Utkan Demirci
Journal:  Trends Biotechnol       Date:  2012-12-19       Impact factor: 19.536

Review 5.  Manipulating biological agents and cells in micro-scale volumes for applications in medicine.

Authors:  Savas Tasoglu; Umut Atakan Gurkan; Shuqi Wang; Utkan Demirci
Journal:  Chem Soc Rev       Date:  2013-07-07       Impact factor: 54.564

6.  Engineering cancer microenvironments for in vitro 3-D tumor models.

Authors:  Waseem Asghar; Rami El Assal; Hadi Shafiee; Sharon Pitteri; Ramasamy Paulmurugan; Utkan Demirci
Journal:  Mater Today (Kidlington)       Date:  2015-12       Impact factor: 31.041

7.  High-throughput Characterization of HIV-1 Reservoir Reactivation Using a Single-Cell-in-Droplet PCR Assay.

Authors:  Robert W Yucha; Kristen S Hobbs; Emily Hanhauser; Louise E Hogan; Wildaliz Nieves; Mehmet O Ozen; Fatih Inci; Vanessa York; Erica A Gibson; Cassandra Thanh; Hadi Shafiee; Rami El Assal; Maja Kiselinova; Yvonne P Robles; Helen Bae; Kaitlyn S Leadabrand; ShuQi Wang; Steven G Deeks; Daniel R Kuritzkes; Utkan Demirci; Timothy J Henrich
Journal:  EBioMedicine       Date:  2017-05-04       Impact factor: 8.143

8.  Engineering anisotropic biomimetic fibrocartilage microenvironment by bioprinting mesenchymal stem cells in nanoliter gel droplets.

Authors:  Umut A Gurkan; Rami El Assal; Simin E Yildiz; Yuree Sung; Alexander J Trachtenberg; Winston P Kuo; Utkan Demirci
Journal:  Mol Pharm       Date:  2014-03-13       Impact factor: 4.939

  8 in total

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