Literature DB >> 23034595

Genomic analysis of two novel human enterovirus C genotypes found in respiratory samples from Peru.

Rafal Tokarz1, David L Hirschberg1, Stephen Sameroff1, Saddef Haq1, Giannina Luna2, Andrew J Bennett2,3, Maria Silva2, Mariana Leguia2, Matthew Kasper2, Daniel G Bausch2, W Ian Lipkin1.   

Abstract

We report the discovery of two enteroviruses detected in nasopharyngeal samples obtained from subjects with respiratory disease in Peru. Phylogenetic analysis indicated that both viruses belong to a clade within the species Human enterovirus C, which includes the recently characterized human enteroviruses 109 and 104. Members of this clade have undergone significant genomic rearrangement, as indicated by deletions in the hypervariable region of the 5' UTR and the VP1 protein, as well as recombination within the non-structural genes. Our findings and review of published sequences suggests that several novel human enterovirus C serotypes are currently circulating worldwide.

Entities:  

Mesh：

Substances：

Year:  2012        PMID： 23034595      PMCID： PMC3542718          DOI： 10.1099/vir.0.046250-0

Source DB:  PubMed          Journal:  J Gen Virol        ISSN： 0022-1317            Impact factor:   3.891


  21 in total

1.  Population-based active surveillance cohort studies for influenza: lessons from Peru.

Authors:  Hugo Razuri; Candice Romero; Yeny Tinoco; Maria Claudia Guezala; Ernesto Ortiz; Maria Silva; Erik Reaves; Maya Williams; Victor Alberto Laguna-Torres; Eric S Halsey; Jorge Gomez; Eduardo Azziz-Baumgartner; Marc-Alain Widdowson; Joe Bresee; Ann Moen; Timothy M Uyeki; Andrew Bennett; Joel M Montgomery; Daniel G Bausch
Journal:  Bull World Health Organ       Date:  2012-04-01       Impact factor: 9.408

Review 2.  Role of recombination in evolution of enteroviruses.

Authors:  Alexander N Lukashev
Journal:  Rev Med Virol       Date:  2005 May-Jun       Impact factor: 6.989

3.  MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.

Authors:  Koichiro Tamura; Joel Dudley; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2007-05-07       Impact factor: 16.240

4.  Antigenic structure of polioviruses of serotypes 1, 2 and 3.

Authors:  P D Minor; M Ferguson; D M Evans; J W Almond; J P Icenogle
Journal:  J Gen Virol       Date:  1986-07       Impact factor: 3.891

5.  Molecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to picornavirus classification.

Authors:  M S Oberste; K Maher; D R Kilpatrick; M A Pallansch
Journal:  J Virol       Date:  1999-03       Impact factor: 5.103

6.  Human rhinovirus and human respiratory enterovirus (EV68 and EV104) infections in hospitalized patients in Italy, 2008-2009.

Authors:  Antonio Piralla; Daniele Lilleri; Antonella Sarasini; Antonietta Marchi; Marco Zecca; Mauro Stronati; Fausto Baldanti; Giuseppe Gerna
Journal:  Diagn Microbiol Infect Dis       Date:  2012-04-10       Impact factor: 2.803

7.  Worldwide emergence of multiple clades of enterovirus 68.

Authors:  Rafal Tokarz; Cadhla Firth; Shabir A Madhi; Stephen R C Howie; Winfred Wu; Amadou Alpha Sall; Saddef Haq; Thomas Briese; W Ian Lipkin
Journal:  J Gen Virol       Date:  2012-06-13       Impact factor: 3.891

8.  Complete genomic sequencing shows that polioviruses and members of human enterovirus species C are closely related in the noncapsid coding region.

Authors:  Betty Brown; M Steven Oberste; Kaija Maher; Mark A Pallansch
Journal:  J Virol       Date:  2003-08       Impact factor: 5.103

9.  Enterovirus 104 infection in adult, Japan, 2011.

Authors:  Atsushi Kaida; Hideyuki Kubo; Jun-ichiro Sekiguchi; Atsushi Hase; Nobuhiro Iritani
Journal:  Emerg Infect Dis       Date:  2012-05       Impact factor: 6.883

10.  Diagnostic system for rapid and sensitive differential detection of pathogens.

Authors:  Thomas Briese; Gustavo Palacios; Mark Kokoris; Omar Jabado; Zhiqiang Liu; Neil Renwick; Vishal Kapoor; Inmaculada Casas; Francisco Pozo; Ron Limberger; Pilar Perez-Brena; Jingyue Ju; W Ian Lipkin
Journal:  Emerg Infect Dis       Date:  2005-02       Impact factor: 6.883
View more
  11 in total

1.  Identification of Enterovirus C105 for the first time in New Zealand.

Authors:  Angela Todd; Susan Taylor; Q Sue Huang
Journal:  Western Pac Surveill Response J       Date:  2015-02-10

2.  Genomic analysis of coxsackieviruses A1, A19, A22, enteroviruses 113 and 104: viruses representing two clades with distinct tropism within enterovirus C.

Authors:  Rafal Tokarz; Saddef Haq; Stephen Sameroff; Stephen R C Howie; W Ian Lipkin
Journal:  J Gen Virol       Date:  2013-06-12       Impact factor: 3.891

Review 3.  Enteroviruses in the early 21st century: new manifestations and challenges.

Authors:  Debra Lugo; Paul Krogstad
Journal:  Curr Opin Pediatr       Date:  2016-02       Impact factor: 2.856

4.  Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platform.

Authors:  Andy Kilianski; Patrick Carcel; Shijie Yao; Pierce Roth; Josh Schulte; Greg B Donarum; Ed T Fochler; Jessica M Hill; Alvin T Liem; Michael R Wiley; Jason T Ladner; Bradley P Pfeffer; Oliver Elliot; Alexandra Petrosov; Dereje D Jima; Tyghe G Vallard; Melanie C Melendrez; Evan Skowronski; Phenix-Lan Quan; W Ian Lipkin; Henry S Gibbons; David L Hirschberg; Gustavo F Palacios; C Nicole Rosenzweig
Journal:  BMC Bioinformatics       Date:  2015-12-29       Impact factor: 3.169

5.  Newly Identified Enterovirus C Genotypes, Identified in the Netherlands through Routine Sequencing of All Enteroviruses Detected in Clinical Materials from 2008 to 2015.

Authors:  Coretta C Van Leer-Buter; Randy Poelman; Renze Borger; Hubert G M Niesters
Journal:  J Clin Microbiol       Date:  2016-06-29       Impact factor: 5.948

6.  Detection of central nervous system viral infections in adults in Manado, North Sulawesi, Indonesia.

Authors:  Arthur H P Mawuntu; Janno B B Bernadus; Rama Dhenni; Ageng Wiyatno; Riane Anggreani; Frilasita A Yudhaputri; Ungke Anton Jaya; Chairin Nisa Ma'roef; Aghnianditya K Dewantari; Araniy Fadhilah; Jeremy P Ledermann; Ann M Powers; Dodi Safari; Khin Saw Aye Myint
Journal:  PLoS One       Date:  2018-11-16       Impact factor: 3.240

7.  Genome characterisation of enteroviruses 117 and 118: a new group within human enterovirus species C.

Authors:  Antonio Piralla; Cristina Daleno; Alessia Scala; David Greenberg; Vytautas Usonis; Nicola Principi; Fausto Baldanti; Susanna Esposito
Journal:  PLoS One       Date:  2013-04-02       Impact factor: 3.240

Review 8.  Rhinoviruses and Respiratory Enteroviruses: Not as Simple as ABC.

Authors:  Léna Royston; Caroline Tapparel
Journal:  Viruses       Date:  2016-01-11       Impact factor: 5.048

9.  Detection by Direct Next Generation Sequencing Analysis of Emerging Enterovirus D68 and C109 Strains in an Environmental Sample From Scotland.

Authors:  Manasi Majumdar; Javier Martin
Journal:  Front Microbiol       Date:  2018-08-21       Impact factor: 5.640

10.  Newly emerging C group enteroviruses may elude diagnosis due to a divergent 5'-UTR.

Authors:  Jan Richter; Christina Tryfonos; Christakis Panagiotou; Elpiniki Nikolaou; Maria Koliou; Christina Christodoulou
Journal:  Int J Infect Dis       Date:  2013-09-07       Impact factor: 3.623
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.