| Literature DB >> 23028750 |
Abstract
BACKGROUND: Distinguishing melanoma from dysplastic nevi can be challenging.Entities:
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Year: 2012 PMID: 23028750 PMCID: PMC3459895 DOI: 10.1371/journal.pone.0045037
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Representative images of immunochemistry staining of dysplastic nevi and melanoma.
(a) Dysplastic nevi with strong BRMS1 staining; (b) Dysplastic nevi with weak Cul1 staining; (c) Melanoma with weak BRMS1 staining; (d) Melanoma with strong Cul1 staining. Magnification, ×200.
Biological functions of 12 markers.
| Marker | Full name | Function | Localization |
| pAkt | Protein Kinase B | A serine/threonine kinase that leads to stimulation of cellcycle progression, cell proliferation, and inhibition of apoptosis | Cytoplasm |
| Bim | BCL2-like 11 | A BH3-only protein belonging to the Bcl-2 family ofapoptotic regulators | Cytoplasm |
| BRG1 | Brahma-related gene-1 | A component of SWI ?SNF chromatin remodelling complex | NucleusCytoplasm |
| BRMS1 | Breast cancer metastasis suppressor 1 | A component of the mSin3a family of histone deacetylasecomplexes | Nucleus |
| CTHRC1 | Collagen triple helix repeat containing 1 | A pro-migratory protein first found to be expressedduring rat tissue repair process | Cytoplasm |
| Cul1 | Cullin 1 | A rigid scaffold in SCF (Skp1/Cullin/Rbx1/F-box protein)complex | Nucleus |
| ING4 | Inhibitor of growth family, member 4 | Tumor suppressor which interacts with p53, inhibits cell growth, and induces apoptosis | Nucleus |
| MCL1 | Myeloid cell leukemia sequence 1 (BCL2-related) | Myeloid cell leukaemia-1, an anti-apoptotic protein | Cytoplasm |
| NQO1 | NAD(P)H dehydrogenase, quinone 1 | A key enzyme involved in metabolism of quinones | Cytoplasm |
| SKP2 | S-phase kinase-associated protein 2 | An F-box protein, targets cell cycle regulators viaubiquitin-mediated degradation | CytoplasmNucleus |
| SNF5 | SWI/SNF related, matrix-associated, actin-dependent A regulator of chromatin, subfamilyb, member 1 | Tumor suppressor, the core subunit of SWI/SNF complex | NucleusCytoplasm |
| SOX4 | Sex determining region Y-box 4 | Embryonic development and differentiation | Nucleus |
Discrimination of melanoma from dysplastic nevi using individual marker via univariate logistic regression analysis.
| Marker | Optimal scale partitioning | Chi-square | P value |
| Akt | 0 vs. 1–2 vs. 3 | 3.203 | 0.202 |
| Bim | 0 vs. 1–2 vs. 3 | 10.712 | 0.005 |
| BRG1 | 0 vs. 1–2 vs. 3 | 9.595 | 0.008 |
| BRMS1 | 0 vs. 1–2 vs. 3 | 0.893 | 0.640 |
| CTHRC1 | 0 vs. 1–2 vs. 3 | 3.398 | 0.183 |
| Cul1 | 0 vs. 1–2 vs. 3 | 30.991 | 1.961×10−7 |
| ING4 | 0 vs. 1–2 vs. 3 | 21.218 | 2.469×10−5 |
| MCL1 | 0 vs. 1–2 vs. 3 | 1.349 | 0.510 |
| NQO1 | 0 vs. 1–2 vs. 3 | 5.714 | 0.057 |
| SKP2 | 0 vs. 1–2 vs. 3 | 3.705 | 0.517 |
| SNF5 | 0 vs. 1–2 vs. 3 | 0.788 | 0.674 |
| SOX4 | 0 vs. 1–2 vs. 3 | 2.222 | 0.329 |
0, negative; 1, weak; 2, moderate; 3, strong.
Discrimination of melanoma from dysplastic nevi via multiple logistic regressions.
| Marker | Chi-square | P value |
|
| 7.416 | 0.025 |
|
| 10.723 | 0.005 |
|
| 18.820 | 8.190×10−5 |
|
| 12.817 | 0.002 |
Diagnostic accuracy for melanoma via sensitivity and specificity of each individual marker.
| Marker | Sensitivity, % | Specificity, % |
| Bim | 81.06 | 45.46 |
| BRG1 | 97.14 | 26.67 |
| Cul1 | 90.98 | 61.83 |
| ING4 | 93.44 | 66.67 |
Figure 2ROC curve for 4-markers (ING4-Cul1-BRG1-Bim, purple curve), 3-markers (ING4-Cul1- BRG1, green curve) and 2-marker (ING4-Cul1, blue curve).
Figure 3Architecture and performance of ANN. (a)
ANN architecture. The network consisted of three layers: Input (boxes 1–12), hidden (circles 1–6) and output (group 1: dysplastic nevi, group 2: melanoma) layer, respectively. (b) ANN predicted-by-observed performance chart. The box plots represent the predicted-pseudo-probabilities for the output category; dysplastic nevi (blue) and melanoma (green) plotted against the known clinical status for dysplastic nevi and melanoma. (c) The ROC curve for dysplastic nevi and melanoma separately.
Figure 4Classification tree of ING4, Cul1, BRG1 and Bim biomarkers for dysplastic nevi and melanoma.
Nevi, dysplastic nevi; PM+MM, primary and metastatic melanoma.
Figure 5Classification tree of Cul1, ING4 and CTHRC1 biomarkers for dysplastic nevi and primary melanoma.
Nevi, dysplastic nevi; PM, primary melanoma.
Figure 6Classification tree for ING4, Cul1 and BRMS1 biomarkers for dysplastic nevi and metastatic melanoma.
Nevi, dysplastic nevi; MM, metastatic melanoma.