Literature DB >> 23012283

Complete genome sequence of Desulfurococcus fermentans, a hyperthermophilic cellulolytic crenarchaeon isolated from a freshwater hot spring in Kamchatka, Russia.

Dwi Susanti1, Eric F Johnson, Jason R Rodriguez, Iain Anderson, Anna A Perevalova, Nikos Kyrpides, Susan Lucas, James Han, Alla Lapidus, Jan-Fang Cheng, Lynne Goodwin, Sam Pitluck, Konstantinos Mavrommatis, Lin Peters, Miriam L Land, Loren Hauser, Venkat Gopalan, Patricia P Chan, Todd M Lowe, Haruyuki Atomi, Elizaveta A Bonch-Osmolovskaya, Tanja Woyke, Biswarup Mukhopadhyay.   

Abstract

Desulfurococcus fermentans is the first known cellulolytic archaeon. This hyperthermophilic and strictly anaerobic crenarchaeon produces hydrogen from fermentation of various carbohydrates and peptides without inhibition by accumulating hydrogen. The complete genome sequence reported here suggested that D. fermentans employs membrane-bound hydrogenases and novel glycohydrolases for hydrogen production from cellulose.

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Year:  2012        PMID： 23012283      PMCID： PMC3458677          DOI： 10.1128/JB.01314-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  5 in total

1.  GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes.

Authors:  Amrita Pati; Natalia N Ivanova; Natalia Mikhailova; Galina Ovchinnikova; Sean D Hooper; Athanasios Lykidis; Nikos C Kyrpides
Journal:  Nat Methods       Date:  2010-05-02       Impact factor: 28.547

2.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

3.  Desulfurococcus fermentans sp. nov., a novel hyperthermophilic archaeon from a Kamchatka hot spring, and emended description of the genus Desulfurococcus.

Authors:  A A Perevalova; V A Svetlichny; I V Kublanov; N A Chernyh; N A Kostrikina; T P Tourova; B B Kuznetsov; E A Bonch-Osmolovskaya
Journal:  Int J Syst Evol Microbiol       Date:  2005-05       Impact factor: 2.747

4.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

5.  Desulfurococcus kamchatkensis sp. nov., a novel hyperthermophilic protein-degrading archaeon isolated from a Kamchatka hot spring.

Authors:  I V Kublanov; S Kh Bidjieva; A V Mardanov; E A Bonch-Osmolovskaya
Journal:  Int J Syst Evol Microbiol       Date:  2009-06-19       Impact factor: 2.747
  5 in total
  4 in total

1.  Characterization of a thermostable endoglucanase produced by Isoptericola variabilis sp. IDAH9.

Authors:  Maryam Azizi; Jafar Hemmat; Seyed Morteza Seifati; Ibrahim Torktaz; Soodabeh Karimi
Journal:  Braz J Microbiol       Date:  2015 Oct-Dec       Impact factor: 2.476

2.  Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533T, a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia.

Authors:  Dwi Susanti; Eric F Johnson; Alla Lapidus; James Han; T B K Reddy; Supratim Mukherjee; Manoj Pillay; Anna A Perevalova; Natalia N Ivanova; Tanja Woyke; Nikos C Kyrpides; Biswarup Mukhopadhyay
Journal:  Genome Announc       Date:  2017-04-13

3.  Metabolic reconstruction and experimental verification of glucose utilization in Desulfurococcus amylolyticus DSM 16532.

Authors:  Barbara Reischl; İpek Ergal; Simon K-M R Rittmann
Journal:  Folia Microbiol (Praha)       Date:  2018-05-24       Impact factor: 2.099

4.  Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland.

Authors:  Dwi Susanti; Eric F Johnson; Alla Lapidus; James Han; T B K Reddy; Manoj Pilay; Natalia N Ivanova; Victor M Markowitz; Tanja Woyke; Nikos C Kyrpides; Biswarup Mukhopadhyay
Journal:  Stand Genomic Sci       Date:  2016-01-13
  4 in total

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