Literature DB >> 23012278

Draft genome sequences of Helicobacter pylori isolates from Malaysia, cultured from patients with functional dyspepsia and gastric cancer.

Selva Perumal Gunaletchumy1, Xinsheng Teh, Yalda Khosravi, Nur Siti Khadijah Ramli, Eng Guan Chua, Thevakumar Kavitha, Joanne N Mason, Huey Tyng Lee, Halimah Alias, Nur Zafirah Zaidan, Norzawani Buang M Yassin, Liang Chung Tay, Stephen Rudd, Hazel M Mitchell, Nadeem O Kaakoush, Mun Fai Loke, Khean Lee Goh, Jamuna Vadivelu.   

Abstract

Helicobacter pylori is the main bacterial causative agent of gastroduodenal disorders and a risk factor for gastric adenocarcinoma and mucosa-associated lymphoid tissue (MALT) lymphoma. The draft genomes of 10 closely related H. pylori isolates from the multiracial Malaysian population will provide an insight into the genetic diversity of isolates in Southeast Asia. These isolates were cultured from gastric biopsy samples from patients with functional dyspepsia and gastric cancer. The availability of this genomic information will provide an opportunity for examining the evolution and population structure of H. pylori isolates from Southeast Asia, where the East meets the West.

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Year:  2012        PMID： 23012278      PMCID： PMC3458671          DOI： 10.1128/JB.01278-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  8 in total

1.  The complete genome sequence of the gastric pathogen Helicobacter pylori.

Authors:  J F Tomb; O White; A R Kerlavage; R A Clayton; G G Sutton; R D Fleischmann; K A Ketchum; H P Klenk; S Gill; B A Dougherty; K Nelson; J Quackenbush; L Zhou; E F Kirkness; S Peterson; B Loftus; D Richardson; R Dodson; H G Khalak; A Glodek; K McKenney; L M Fitzegerald; N Lee; M D Adams; E K Hickey; D E Berg; J D Gocayne; T R Utterback; J D Peterson; J M Kelley; M D Cotton; J M Weidman; C Fujii; C Bowman; L Watthey; E Wallin; W S Hayes; M Borodovsky; P D Karp; H O Smith; C M Fraser; J C Venter
Journal:  Nature       Date:  1997-08-07       Impact factor: 49.962

2.  ABySS: a parallel assembler for short read sequence data.

Authors:  Jared T Simpson; Kim Wong; Shaun D Jackman; Jacqueline E Schein; Steven J M Jones; Inanç Birol
Journal:  Genome Res       Date:  2009-02-27       Impact factor: 9.043

Review 3.  Epidemiology of Helicobacter pylori infection and gastric cancer in Asia.

Authors:  Kwong Ming Fock; Tiing Leong Ang
Journal:  J Gastroenterol Hepatol       Date:  2010-03       Impact factor: 4.029

4.  A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains.

Authors:  N Salama; K Guillemin; T K McDaniel; G Sherlock; L Tompkins; S Falkow
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

5.  Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori.

Authors:  R A Alm; L S Ling; D T Moir; B L King; E D Brown; P C Doig; D R Smith; B Noonan; B C Guild; B L deJonge; G Carmel; P J Tummino; A Caruso; M Uria-Nickelsen; D M Mills; C Ives; R Gibson; D Merberg; S D Mills; Q Jiang; D E Taylor; G F Vovis; T J Trust
Journal:  Nature       Date:  1999-01-14       Impact factor: 49.962

6.  Fast scaffolding with small independent mixed integer programs.

Authors:  Leena Salmela; Veli Mäkinen; Niko Välimäki; Johannes Ylinen; Esko Ukkonen
Journal:  Bioinformatics       Date:  2011-10-13       Impact factor: 6.937

7.  Gain and loss of multiple genes during the evolution of Helicobacter pylori.

Authors:  Helga Gressmann; Bodo Linz; Rohit Ghai; Klaus-Peter Pleissner; Ralph Schlapbach; Yoshio Yamaoka; Christian Kraft; Sebastian Suerbaum; Thomas F Meyer; Mark Achtman
Journal:  PLoS Genet       Date:  2005-10       Impact factor: 5.917

8.  Population structure of Helicobacter pylori among ethnic groups in Malaysia: recent acquisition of the bacterium by the Malay population.

Authors:  Chin Yen Tay; Hazel Mitchell; Quanjiang Dong; Khean-Lee Goh; Ian W Dawes; Ruiting Lan
Journal:  BMC Microbiol       Date:  2009-06-19       Impact factor: 3.605
  8 in total
  4 in total

1.  Multiple Genome Sequences of Helicobacter pylori Strains of Diverse Disease and Antibiotic Resistance Backgrounds from Malaysia.

Authors:  Vellaya Rehvathy; Mun Hua Tan; Selva Perumal Gunaletchumy; Xinsheng Teh; Susana Wang; Primo Baybayan; Siddarth Singh; Meredith Ashby; Nadeem O Kaakoush; Hazel M Mitchell; Laurence J Croft; Khean Lee Goh; Mun Fai Loke; Jamuna Vadivelu
Journal:  Genome Announc       Date:  2013-09-19

2.  The NOD-like receptor signalling pathway in Helicobacter pylori infection and related gastric cancer: a case-control study and gene expression analyses.

Authors:  Natalia Castaño-Rodríguez; Nadeem O Kaakoush; Khean-Lee Goh; Kwong Ming Fock; Hazel M Mitchell
Journal:  PLoS One       Date:  2014-06-05       Impact factor: 3.240

3.  Comparative genomic analysis of Helicobacter pylori from Malaysia identifies three distinct lineages suggestive of differential evolution.

Authors:  Narender Kumar; Vanitha Mariappan; Ramani Baddam; Aditya K Lankapalli; Sabiha Shaik; Khean-Lee Goh; Mun Fai Loke; Tim Perkins; Mohammed Benghezal; Seyed E Hasnain; Jamuna Vadivelu; Barry J Marshall; Niyaz Ahmed
Journal:  Nucleic Acids Res       Date:  2014-12-01       Impact factor: 16.971

4.  Autophagy mediates ER stress and inflammation in Helicobacter pylori-related gastric cancer.

Authors:  M C Mommersteeg; I Simovic; B Yu; S A V van Nieuwenburg; I M J Bruno; M Doukas; E J Kuipers; M C W Spaander; M P Peppelenbosch; N Castaño-Rodríguez; G M Fuhler
Journal:  Gut Microbes       Date:  2022 Jan-Dec
  4 in total

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