Literature DB >> 23011646

The synthesis-diffusion-degradation model explains Bicoid gradient formation in unfertilized eggs.

J A Drocco1, E F Wieschaus, D W Tank.   

Abstract

Precise formation of morphogen gradients is essential to the establishment of reproducible pattern in development. Mechanisms proposed for obtaining the requisite precision range from simple models with few parameters to more complex models involving many regulated quantities. The synthesis-diffusion-degradation (SDD) model is a relatively simple model explaining the formation of the Bicoid gradient in Drosophila melanogaster, in which the steady-state characteristic length of the gradient is determined solely by the rates of diffusion and degradation of the morphogen. In this work, we test the SDD model in unfertilized D. melanogaster eggs, which contain a single female pronucleus and lack the nuclear division cycles and other zygotic regulatory processes seen in fertilized eggs. Using two-photon live imaging as well as a novel method for quantitative imaging based on decorrelation of photoswitching waveforms, we find that the Bicoid gradient is longer and shallower in unfertilized eggs as compared to the gradient at the same time points in fertilized eggs. Using a means of measuring the Bicoid lifetime by conjugation to a photoconvertible fluorophore, we find that the lifetime is correspondingly longer in unfertilized eggs, providing qualitative and quantitative agreement with the predictions of the SDD model.

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Year:  2012        PMID: 23011646      PMCID: PMC3540996          DOI: 10.1088/1478-3975/9/5/055004

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  35 in total

1.  Measurement and perturbation of morphogen lifetime: effects on gradient shape.

Authors:  Jeffrey A Drocco; Oliver Grimm; David W Tank; Eric Wieschaus
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

2.  A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm.

Authors:  Charless C Fowlkes; Cris L Luengo Hendriks; Soile V E Keränen; Gunther H Weber; Oliver Rübel; Min-Yu Huang; Sohail Chatoor; Angela H DePace; Lisa Simirenko; Clara Henriquez; Amy Beaton; Richard Weiszmann; Susan Celniker; Bernd Hamann; David W Knowles; Mark D Biggin; Michael B Eisen; Jitendra Malik
Journal:  Cell       Date:  2008-04-18       Impact factor: 41.582

3.  Photoactivation turns green fluorescent protein red.

Authors:  M B Elowitz; M G Surette; P E Wolf; J Stock; S Leibler
Journal:  Curr Biol       Date:  1997-10-01       Impact factor: 10.834

4.  Pulse-chase studies of the synthesis and intracellular transport of apolipoprotein B-100 in Hep G2 cells.

Authors:  K Boström; M Wettesten; J Borén; G Bondjers; O Wiklund; S O Olofsson
Journal:  J Biol Chem       Date:  1986-10-15       Impact factor: 5.157

5.  The gradient morphogen bicoid is a concentration-dependent transcriptional activator.

Authors:  G Struhl; K Struhl; P M Macdonald
Journal:  Cell       Date:  1989-06-30       Impact factor: 41.582

6.  Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes.

Authors:  Nicholas T Ingolia; Liana F Lareau; Jonathan S Weissman
Journal:  Cell       Date:  2011-11-03       Impact factor: 41.582

7.  The role of localization of bicoid RNA in organizing the anterior pattern of the Drosophila embryo.

Authors:  T Berleth; M Burri; G Thoma; D Bopp; S Richstein; G Frigerio; M Noll; C Nüsslein-Volhard
Journal:  EMBO J       Date:  1988-06       Impact factor: 11.598

8.  Analysis of gap gene regulation in a 3D organism-scale model of the Drosophila melanogaster embryo.

Authors:  James B Hengenius; Michael Gribskov; Ann E Rundell; Charless C Fowlkes; David M Umulis
Journal:  PLoS One       Date:  2011-11-16       Impact factor: 3.240

9.  Pre-steady-state decoding of the Bicoid morphogen gradient.

Authors:  Sven Bergmann; Oded Sandler; Hila Sberro; Sara Shnider; Eyal Schejter; Ben-Zion Shilo; Naama Barkai
Journal:  PLoS Biol       Date:  2007-02       Impact factor: 8.029

10.  ScanImage: flexible software for operating laser scanning microscopes.

Authors:  Thomas A Pologruto; Bernardo L Sabatini; Karel Svoboda
Journal:  Biomed Eng Online       Date:  2003-05-17       Impact factor: 2.819

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  9 in total

1.  Spatiotemporal analysis of different mechanisms for interpreting morphogen gradients.

Authors:  David M Richards; Timothy E Saunders
Journal:  Biophys J       Date:  2015-04-21       Impact factor: 4.033

2.  Modulating the bicoid gradient in space and time.

Authors:  Xiaoli Cai; Inge Rondeel; Stefan Baumgartner
Journal:  Hereditas       Date:  2021-08-17       Impact factor: 3.271

Review 3.  Insights into mammalian morphogen dynamics from embryonic stem cell systems.

Authors:  Elena Camacho-Aguilar; Aryeh Warmflash
Journal:  Curr Top Dev Biol       Date:  2020-02-13       Impact factor: 4.897

4.  Estimating binding properties of transcription factors from genome-wide binding profiles.

Authors:  Nicolae Radu Zabet; Boris Adryan
Journal:  Nucleic Acids Res       Date:  2014-11-28       Impact factor: 16.971

5.  Bicoid signal extraction with a selection of parametric and nonparametric signal processing techniques.

Authors:  Zara Ghodsi; Emmanuel Sirimal Silva; Hossein Hassani
Journal:  Genomics Proteomics Bioinformatics       Date:  2015-07-18       Impact factor: 7.691

6.  An inside-out origin for the eukaryotic cell.

Authors:  David A Baum; Buzz Baum
Journal:  BMC Biol       Date:  2014-10-28       Impact factor: 7.431

7.  Single-molecule tracking of Nodal and Lefty in live zebrafish embryos supports hindered diffusion model.

Authors:  Amit N Landge; David Mörsdorf; Timo Kuhn; Jonas Coßmann; Johanna Gerstenecker; Daniel Čapek; Patrick Müller; J Christof M Gebhardt
Journal:  Nat Commun       Date:  2022-10-15       Impact factor: 17.694

8.  Cortical movement of Bicoid in early Drosophila embryos is actin- and microtubule-dependent and disagrees with the SDD diffusion model.

Authors:  Xiaoli Cai; Mira Akber; Alexander Spirov; Stefan Baumgartner
Journal:  PLoS One       Date:  2017-10-03       Impact factor: 3.240

9.  No significant regulation of bicoid mRNA by Pumilio or Nanos in the early Drosophila embryo.

Authors:  Tammy H Wharton; Krystle J Nomie; Robin P Wharton
Journal:  PLoS One       Date:  2018-03-30       Impact factor: 3.240

  9 in total

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