Literature DB >> 23010777

3'-UTRs as a source of regulatory RNAs in bacteria.

Markus Gössringer1, Roland K Hartmann.   

Abstract

Bacterial small non-coding RNAs, sRNAs, have up to now been identified primarily in intergenic regions. Chao et al reveal that the 3'-region of mRNAs is another rich reservoir of sRNAs.

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Year:  2012        PMID： 23010777      PMCID： PMC3474932          DOI： 10.1038/emboj.2012.269

Source DB:  PubMed          Journal:  EMBO J        ISSN： 0261-4189            Impact factor:   11.598


  10 in total

1.  Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator.

Authors:  Thomas A Geissmann; Danièle Touati
Journal:  EMBO J       Date:  2004-01-22       Impact factor: 11.598

2.  RNAs actively cycle on the Sm-like protein Hfq.

Authors:  Aurélie Fender; Johan Elf; Kornelia Hampel; Bastian Zimmermann; E Gerhart H Wagner
Journal:  Genes Dev       Date:  2010-12-01       Impact factor: 11.361

Review 3.  Bacterial small RNA regulators: versatile roles and rapidly evolving variations.

Authors:  Susan Gottesman; Gisela Storz
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-12-01       Impact factor: 10.005

4.  The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA.

Authors:  Toby J Soper; Sarah A Woodson
Journal:  RNA       Date:  2008-07-24       Impact factor: 4.942

5.  Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA.

Authors:  Cynthia M Sharma; Kai Papenfort; Sandy R Pernitzsch; Hans-Joachim Mollenkopf; Jay C D Hinton; Jörg Vogel
Journal:  Mol Microbiol       Date:  2011-07-27       Impact factor: 3.501

Review 6.  Hfq and its constellation of RNA.

Authors:  Jörg Vogel; Ben F Luisi
Journal:  Nat Rev Microbiol       Date:  2011-08-15       Impact factor: 60.633

7.  Structure of Escherichia coli Hfq bound to polyriboadenylate RNA.

Authors:  Todd M Link; Poul Valentin-Hansen; Richard G Brennan
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-04       Impact factor: 11.205

8.  An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs.

Authors:  Yanjie Chao; Kai Papenfort; Richard Reinhardt; Cynthia M Sharma; Jörg Vogel
Journal:  EMBO J       Date:  2012-08-24       Impact factor: 11.598

9.  Translational control and target recognition by Escherichia coli small RNAs in vivo.

Authors:  Johannes H Urban; Jörg Vogel
Journal:  Nucleic Acids Res       Date:  2007-01-30       Impact factor: 16.971

10.  The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium.

Authors:  Alexandra Sittka; Verena Pfeiffer; Karsten Tedin; Jörg Vogel
Journal:  Mol Microbiol       Date:  2006-12-05       Impact factor: 3.501
  10 in total
  7 in total

1.  Lactobacillus reuteri-specific immunoregulatory gene rsiR modulates histamine production and immunomodulation by Lactobacillus reuteri.

Authors:  P Hemarajata; C Gao; K J Pflughoeft; C M Thomas; D M Saulnier; J K Spinler; J Versalovic
Journal:  J Bacteriol       Date:  2013-10-11       Impact factor: 3.490

2.  Search for 5'-leader regulatory RNA structures based on gene annotation aided by the RiboGap database.

Authors:  Mohammad Reza Naghdi; Katia Smail; Joy X Wang; Fallou Wade; Ronald R Breaker; Jonathan Perreault
Journal:  Methods       Date:  2017-03-06       Impact factor: 3.608

3.  A comparison of key aspects of gene regulation in Streptomyces coelicolor and Escherichia coli using nucleotide-resolution transcription maps produced in parallel by global and differential RNA sequencing.

Authors:  David A Romero; Ayad H Hasan; Yu-Fei Lin; Louise Kime; Olatz Ruiz-Larrabeiti; Mia Urem; Giselda Bucca; Lira Mamanova; Emma E Laing; Gilles P van Wezel; Colin P Smith; Vladimir R Kaberdin; Kenneth J McDowall
Journal:  Mol Microbiol       Date:  2014-09-30       Impact factor: 3.501

Review 4.  Regulatory 3' Untranslated Regions of Bacterial mRNAs.

Authors:  Gai-Xian Ren; Xiao-Peng Guo; Yi-Cheng Sun
Journal:  Front Microbiol       Date:  2017-07-10       Impact factor: 5.640

5.  Temperature-dependent sRNA transcriptome of the Lyme disease spirochete.

Authors:  Niko Popitsch; Ivana Bilusic; Philipp Rescheneder; Renée Schroeder; Meghan Lybecker
Journal:  BMC Genomics       Date:  2017-01-05       Impact factor: 3.969

Review 6.  Regulatory RNAs in the Less Studied Streptococcal Species: From Nomenclature to Identification.

Authors:  Mohamed A Zorgani; Roland Quentin; Marie-Frédérique Lartigue
Journal:  Front Microbiol       Date:  2016-07-26       Impact factor: 5.640

7.  Identification of Plasmid-Encoded sRNAs in a blaNDM-1-Harboring Multidrug-Resistance Plasmid pNDM-HK in Enterobacteriaceae.

Authors:  Hoi-Kuan Kong; Xuan Liu; Wai U Lo; Qing Pan; Carmen O K Law; Ting F Chan; Pak L Ho; Terrence C K Lau
Journal:  Front Microbiol       Date:  2018-03-27       Impact factor: 5.640
  7 in total

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