Literature DB >> 23005133

Stochastic single-gene autoregulation.

Tomás Aquino1, Elsa Abranches, Ana Nunes.   

Abstract

A detailed stochastic model of single-gene autoregulation is established and its solutions are explored when mRNA dynamics is fast compared with protein dynamics and in the opposite regime. The model includes all the sources of randomness that are intrinsic to the autoregulation process and it considers both transcriptional and post-transcriptional regulation. The time-scale separation allows the derivation of analytic expressions for the equilibrium distributions of protein and mRNA. These distributions are generally well described in the continuous approximation, which is used to discuss the qualitative features of the protein equilibrium distributions as a function of the biological parameters in the fast mRNA regime. The performance of the time-scale approximation is assessed by comparison with simulations of the full stochastic system, and a good quantitative agreement is found for a wide range of parameter values. We show that either unimodal or bimodal equilibrium protein distributions can arise, and we discuss the autoregulation mechanisms associated with bimodality.

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Year:  2012        PMID: 23005133     DOI: 10.1103/PhysRevE.85.061913

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  4 in total

1.  Stochastic oscillations induced by intrinsic fluctuations in a self-repressing gene.

Authors:  Jingkui Wang; Marc Lefranc; Quentin Thommen
Journal:  Biophys J       Date:  2014-11-18       Impact factor: 4.033

Review 2.  Stochastic Modeling of Autoregulatory Genetic Feedback Loops: A Review and Comparative Study.

Authors:  James Holehouse; Zhixing Cao; Ramon Grima
Journal:  Biophys J       Date:  2020-02-25       Impact factor: 4.033

3.  Revisiting the Reduction of Stochastic Models of Genetic Feedback Loops with Fast Promoter Switching.

Authors:  James Holehouse; Ramon Grima
Journal:  Biophys J       Date:  2019-08-27       Impact factor: 4.033

4.  A Comparison of Deterministic and Stochastic Modeling Approaches for Biochemical Reaction Systems: On Fixed Points, Means, and Modes.

Authors:  Sayuri K Hahl; Andreas Kremling
Journal:  Front Genet       Date:  2016-08-31       Impact factor: 4.599

  4 in total

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