Literature DB >> 23003193

Adaptation to optimal cell growth through self-organized criticality.

Chikara Furusawa1, Kunihiko Kaneko.   

Abstract

A simple cell model consisting of a catalytic reaction network is studied to show that cellular states are self-organized in a critical state for achieving optimal growth; we consider the catalytic network dynamics over a wide range of environmental conditions, through the spontaneous regulation of nutrient transport into the cell. Furthermore, we find that the adaptability of cellular growth to reach a critical state depends only on the extent of environmental changes, while all chemical species in the cell exhibit correlated partial adaptation. These results are in remarkable agreement with the recent experimental observations of the present cells.

Mesh:

Year:  2012        PMID: 23003193     DOI: 10.1103/PhysRevLett.108.208103

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  11 in total

1.  Global relationships in fluctuation and response in adaptive evolution.

Authors:  Chikara Furusawa; Kunihiko Kaneko
Journal:  J R Soc Interface       Date:  2015-08-06       Impact factor: 4.118

2.  Information-based fitness and the emergence of criticality in living systems.

Authors:  Jorge Hidalgo; Jacopo Grilli; Samir Suweis; Miguel A Muñoz; Jayanth R Banavar; Amos Maritan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-30       Impact factor: 11.205

3.  Criticality and Adaptivity in Enzymatic Networks.

Authors:  Paul J Steiner; Ruth J Williams; Jeff Hasty; Lev S Tsimring
Journal:  Biophys J       Date:  2016-09-06       Impact factor: 4.033

4.  Griffiths phase on hierarchical modular networks with small-world edges.

Authors:  Shanshan Li
Journal:  Phys Rev E       Date:  2017-03-06       Impact factor: 2.529

5.  Heterogeneity and Delayed Activation as Hallmarks of Self-Organization and Criticality in Excitable Tissue.

Authors:  Andraž Stožer; Rene Markovič; Jurij Dolenšek; Matjaž Perc; Marko Marhl; Marjan Slak Rupnik; Marko Gosak
Journal:  Front Physiol       Date:  2019-07-05       Impact factor: 4.566

6.  Long-range correlation in protein dynamics: Confirmation by structural data and normal mode analysis.

Authors:  Qian-Yuan Tang; Kunihiko Kaneko
Journal:  PLoS Comput Biol       Date:  2020-02-13       Impact factor: 4.475

7.  Hydropathicity-based prediction of pain-causing NaV1.7 variants.

Authors:  Makros N Xenakis; Dimos Kapetis; Yang Yang; Monique M Gerrits; Jordi Heijman; Stephen G Waxman; Giuseppe Lauria; Catharina G Faber; Ronald L Westra; Patrick J Lindsey; Hubert J Smeets
Journal:  BMC Bioinformatics       Date:  2021-04-23       Impact factor: 3.169

8.  Engineering self-organized criticality in living cells.

Authors:  Blai Vidiella; Antoni Guillamon; Josep Sardanyés; Victor Maull; Jordi Pla; Nuria Conde; Ricard Solé
Journal:  Nat Commun       Date:  2021-07-20       Impact factor: 14.919

9.  Cooperative adaptive responses in gene regulatory networks with many degrees of freedom.

Authors:  Masayo Inoue; Kunihiko Kaneko
Journal:  PLoS Comput Biol       Date:  2013-04-04       Impact factor: 4.475

10.  Intrinsic noise and deviations from criticality in Boolean gene-regulatory networks.

Authors:  Pablo Villegas; José Ruiz-Franco; Jorge Hidalgo; Miguel A Muñoz
Journal:  Sci Rep       Date:  2016-10-07       Impact factor: 4.379

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