Literature DB >> 23002420

Nanopore-Based Sensors for Detecting Toxicity of a Carbon Nanotube to Proteins.

Binquan Luan1, Ruhong Zhou.   

Abstract

A carbon nanotube (CNT) can be toxic to a living cell by binding to proteins and then impairing their functionalities; however, an efficient screening method that examines binding capability of a CNT to protein molecules in vitro is still unavailable. Here, we show that a nanopore-based sensor can be used to investigate CNT-protein interactions. With proof-of-principle molecular dynamics simulations, we have measured ionic currents in a nanopore when threading a CNT-protein complex through the pore, and demonstrated that CNT's binding capability, and thus potential nanotoxicity, can be inferred from current signals. We have then further investigated mechanics and energetics of CNT-protein interactions with the nanopore sensor. These findings indicate that solid-state nanopores have the potential to be ultra-sensitive and high-throughput sensors for nanotoxicity.

Entities:  

Year:  2012        PMID: 23002420      PMCID: PMC3445412          DOI: 10.1021/jz3007832

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  20 in total

1.  Rapid nanopore discrimination between single polynucleotide molecules.

Authors:  A Meller; L Nivon; E Brandin; J Golovchenko; D Branton
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

2.  Binding of blood proteins to carbon nanotubes reduces cytotoxicity.

Authors:  Cuicui Ge; Jiangfeng Du; Lina Zhao; Liming Wang; Ying Liu; Denghua Li; Yanlian Yang; Ruhong Zhou; Yuliang Zhao; Zhifang Chai; Chunying Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

3.  Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors.

Authors:  Meni Wanunu; Tali Dadosh; Vishva Ray; Jingmin Jin; Larry McReynolds; Marija Drndić
Journal:  Nat Nanotechnol       Date:  2010-10-24       Impact factor: 39.213

4.  Imaging alpha-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential map.

Authors:  Aleksij Aksimentiev; Klaus Schulten
Journal:  Biophys J       Date:  2005-03-11       Impact factor: 4.033

Review 5.  Toxic potential of materials at the nanolevel.

Authors:  Andre Nel; Tian Xia; Lutz Mädler; Ning Li
Journal:  Science       Date:  2006-02-03       Impact factor: 47.728

6.  Single-molecule analysis of DNA-protein complexes using nanopores.

Authors:  Breton Hornblower; Amy Coombs; Richard D Whitaker; Anatoly Kolomeisky; Stephen J Picone; Amit Meller; Mark Akeson
Journal:  Nat Methods       Date:  2007-03-04       Impact factor: 28.547

7.  Direct imaging of single-walled carbon nanotubes in cells.

Authors:  Alexandra E Porter; Mhairi Gass; Karin Muller; Jeremy N Skepper; Paul A Midgley; Mark Welland
Journal:  Nat Nanotechnol       Date:  2007-10-28       Impact factor: 39.213

8.  Reading DNA at single-nucleotide resolution with a mutant MspA nanopore and phi29 DNA polymerase.

Authors:  Elizabeth A Manrao; Ian M Derrington; Andrew H Laszlo; Kyle W Langford; Matthew K Hopper; Nathaniel Gillgren; Mikhail Pavlenok; Michael Niederweis; Jens H Gundlach
Journal:  Nat Biotechnol       Date:  2012-03-25       Impact factor: 54.908

Review 9.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

10.  Nanopore-based detection of circulating microRNAs in lung cancer patients.

Authors:  Yong Wang; Dali Zheng; Qiulin Tan; Michael X Wang; Li-Qun Gu
Journal:  Nat Nanotechnol       Date:  2011-09-04       Impact factor: 39.213

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  1 in total

1.  Folded Conformation, Cyclic Pentamer, Nano-Structure and PAD4 Binding Mode of YW3-56.

Authors:  Haimei Zhu; Yuji Wang; Yaonan Wang; Shurui Zhao; Ming Zhao; Lin Gui; Wenyun Xu; Xiangyun Amy Chen; Yanming Wang; Shiqi Peng
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2013-05-16       Impact factor: 4.126

  1 in total

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