Literature DB >> 22995485

Effect of chain chirality on the self-assembly of sickle hemoglobin.

Xuejin Li1, Bruce Caswell, George Em Karniadakis.   

Abstract

We present simulation results on the self-assembly behavior of sickle hemoglobin (HbS). A coarse-grained HbS model, which contains hydrophilic and hydrophobic particles explicitly, is constructed to match the structural properties and physical description of HbS. The hydrophobic interactions are shown to be necessary with chirality being the main driver for the formation of HbS fibers. In the absence of chain chirality, only small self-assembled aggregates are observed whereas self-assembled elongated steplike bundle microstructures appear when we include chain chirality. We also investigate the effect of confinement on self-assembly, and find that elongated fibers-similar to open-space ones-can be obtained in hard confinement domains but cannot be formed within compliant red blood cell (RBC) domains under the same assumptions. We show, however, that by placing explicitly HbS fibers inside the RBCs and subjecting them to linear elongation and bending, we obtain different types of sickle-shaped RBCs as observed in sickle cell anemia.
Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22995485      PMCID: PMC3446663          DOI: 10.1016/j.bpj.2012.08.017

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  43 in total

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Authors:  Dmitry A Fedosov; Bruce Caswell; George Em Karniadakis
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3.  Self-assembly of laterally-tethered nanorods.

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4.  Molecular dynamics simulation for polymers in the presence of a heat bath.

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5.  A coarse-grain molecular dynamics model for sickle hemoglobin fibers.

Authors:  He Li; George Lykotrafitis
Journal:  J Mech Behav Biomed Mater       Date:  2010-11-10

6.  Curvature instability in a chiral amphiphile self-assembly.

Authors:  Lior Ziserman; Amram Mor; Daniel Harries; Dganit Danino
Journal:  Phys Rev Lett       Date:  2011-06-09       Impact factor: 9.161

7.  Nucleation and growth of fibres and gel formation in sickle cell haemoglobin.

Authors:  R E Samuel; E D Salmon; R W Briehl
Journal:  Nature       Date:  1990-06-28       Impact factor: 49.962

Review 8.  The intracellular polymerization of sickle hemoglobin and its relevance to sickle cell disease.

Authors:  C T Noguchi; A N Schechter
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9.  Polymer-polymer phase behavior.

Authors:  F S Bates
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Authors:  Dmitry A Fedosov; Huan Lei; Bruce Caswell; Subra Suresh; George E Karniadakis
Journal:  PLoS Comput Biol       Date:  2011-12-01       Impact factor: 4.475

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  15 in total

1.  Molecular insights into the irreversible mechanical behavior of sickle hemoglobin.

Authors:  Sumith Yesudasan; Simone A Douglas; Manu O Platt; Xianqiao Wang; Rodney D Averett
Journal:  J Biomol Struct Dyn       Date:  2018-05-04

2.  Transport dissipative particle dynamics model for mesoscopic advection-diffusion-reaction problems.

Authors:  Zhen Li; Alireza Yazdani; Alexandre Tartakovsky; George Em Karniadakis
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3.  Continuum- and particle-based modeling of shapes and dynamics of red blood cells in health and disease.

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4.  Large-scale dissipative particle dynamics simulations of self-assembled amphiphilic systems.

Authors:  Xuejin Li; Yu-Hang Tang; Haojun Liang; George Em Karniadakis
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5.  Dynamics of deformable straight and curved prolate capsules in simple shear flow.

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Journal:  Phys Rev Fluids       Date:  2019-04-18       Impact factor: 2.537

6.  Probing the Twisted Structure of Sickle Hemoglobin Fibers via Particle Simulations.

Authors:  Lu Lu; Xuejin Li; Peter G Vekilov; George Em Karniadakis
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

Review 7.  Biomechanics and biorheology of red blood cells in sickle cell anemia.

Authors:  Xuejin Li; Ming Dao; George Lykotrafitis; George Em Karniadakis
Journal:  J Biomech       Date:  2016-11-12       Impact factor: 2.712

8.  Mesoscopic Adaptive Resolution Scheme toward Understanding of Interactions between Sickle Cell Fibers.

Authors:  Lu Lu; He Li; Xin Bian; Xuejin Li; George Em Karniadakis
Journal:  Biophys J       Date:  2017-07-11       Impact factor: 4.033

Review 9.  Computational Biomechanics of Human Red Blood Cells in Hematological Disorders.

Authors:  Xuejin Li; He Li; Hung-Yu Chang; George Lykotrafitis; George Em Karniadakis
Journal:  J Biomech Eng       Date:  2017-02-01       Impact factor: 2.097

10.  Patient-specific blood rheology in sickle-cell anaemia.

Authors:  Xuejin Li; E Du; Huan Lei; Yu-Hang Tang; Ming Dao; Subra Suresh; George Em Karniadakis
Journal:  Interface Focus       Date:  2016-02-06       Impact factor: 3.906

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