Literature DB >> 22994552

Maternal variation in EPHX1, a xenobiotic metabolism gene, is associated with childhood medulloblastoma: an exploratory case-parent triad study.

Philip J Lupo1, Darryl Nousome2, M Fatih Okcu1, Murali Chintagumpala1, Michael E Scheurer1.   

Abstract

Common epidemiologic study designs used for evaluating germline genetic determinants of childhood medulloblastoma are often subject to population stratification bias and do not account for maternal genetic effects, a proxy for the intrauterine environment, which may be important in determining etiologic factors for this outcome. The case-parent triad design overcomes these limitations. Therefore, we conducted an exploratory study among 27 childhood medulloblastoma case-parent triads recruited from the Childhood Cancer Epidemiology and Prevention Center at Texas Children's Hospital (Houston, USA) between 2003 and 2010. We assessed 13 single nucleotide polymorphisms (SNPs) in nine xenobiotic detoxification genes, as deficiencies in this pathway may induce brain tumorigenesis. Log-linear modeling was used to assess the association between medulloblastoma and both the offspring (i.e., case) and maternal genotypes of each SNP. In our population, there were no offspring genotypes that were significantly associated with disease risk. However, the maternal EPHX1 rs1051740 genotype (RR = 3.26, P = .01) was associated with medulloblastoma risk. This exploratory study highlights the utility of the case-parent triad design, but these results should be interpreted cautiously due to the limited sample size.

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Year:  2012        PMID: 22994552      PMCID: PMC3855527          DOI: 10.3109/08880018.2012.722747

Source DB:  PubMed          Journal:  Pediatr Hematol Oncol        ISSN: 0888-0018            Impact factor:   1.969


  12 in total

1.  Allowing for missing parents in genetic studies of case-parent triads.

Authors:  C R Weinberg
Journal:  Am J Hum Genet       Date:  1999-04       Impact factor: 11.025

2.  Distinguishing the effects of maternal and offspring genes through studies of "case-parent triads".

Authors:  A J Wilcox; C R Weinberg; R T Lie
Journal:  Am J Epidemiol       Date:  1998-11-01       Impact factor: 4.897

3.  A log-linear approach to case-parent-triad data: assessing effects of disease genes that act either directly or through maternal effects and that may be subject to parental imprinting.

Authors:  C R Weinberg; A J Wilcox; R T Lie
Journal:  Am J Hum Genet       Date:  1998-04       Impact factor: 11.025

4.  Association between polymorphisms of EPHX1 and XRCC1 genes and the risk of childhood acute lymphoblastic leukemia.

Authors:  Tugba Boyunegmez Tumer; Gurses Sahin; Emel Arinç
Journal:  Arch Toxicol       Date:  2011-10-09       Impact factor: 5.153

5.  Childhood brain tumors and maternal cured meat consumption in pregnancy: differential effect by glutathione S-transferases.

Authors:  Susan Searles Nielsen; Beth A Mueller; Susan Preston-Martin; Federico M Farin; Elizabeth A Holly; Roberta McKean-Cowdin
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2011-09-13       Impact factor: 4.254

6.  Identification of genetic susceptibility to childhood cancer through analysis of genes in parallel.

Authors:  Sharon E Plon; David A Wheeler; Louise C Strong; Gail E Tomlinson; Michael Pirics; Qingchang Meng; Hannah C Cheung; Phyllis R Begin; Donna M Muzny; Lora Lewis; Jaclyn A Biegel; Richard A Gibbs
Journal:  Cancer Genet       Date:  2011-01

7.  Glutathione S-transferase M1 and T1 polymorphisms may predict adverse effects after therapy in children with medulloblastoma.

Authors:  Nadia Barahmani; Sarah Carpentieri; Xio-Nan Li; Tao Wang; Yumei Cao; Laura Howe; Lindsay Kilburn; Murali Chintagumpala; Ching Lau; M Fatih Okcu
Journal:  Neuro Oncol       Date:  2008-10-24       Impact factor: 12.300

Review 8.  Medulloblastoma: molecular genetics and animal models.

Authors:  Corey Raffel
Journal:  Neoplasia       Date:  2004 Jul-Aug       Impact factor: 5.715

9.  Induction chemotherapy and conformal radiation therapy for very young children with nonmetastatic medulloblastoma: Children's Oncology Group study P9934.

Authors:  David M Ashley; Thomas E Merchant; Douglas Strother; Tianni Zhou; Patricia Duffner; Peter C Burger; Douglas C Miller; Nancy Lyon; Melanie J Bonner; Michael Msall; Allen Buxton; Russell Geyer; Larry E Kun; Lee Coleman; Ian F Pollack
Journal:  J Clin Oncol       Date:  2012-07-30       Impact factor: 44.544

10.  MI-GWAS: a SAS platform for the analysis of inherited and maternal genetic effects in genome-wide association studies using log-linear models.

Authors:  A J Agopian; Laura E Mitchell
Journal:  BMC Bioinformatics       Date:  2011-04-22       Impact factor: 3.169

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  7 in total

1.  Genome-wide association study of maternal and inherited effects on left-sided cardiac malformations.

Authors:  Laura E Mitchell; A J Agopian; Angela Bhalla; Joseph T Glessner; Cecilia E Kim; Michael D Swartz; Hakon Hakonarson; Elizabeth Goldmuntz
Journal:  Hum Mol Genet       Date:  2014-08-18       Impact factor: 6.150

2.  The potential effect of gender in CYP1A1 and GSTM1 genotype-specific associations with pediatric brain tumor.

Authors:  Lyubov E Salnikova; Olesya B Belopolskaya; Natalya I Zelinskaya; Alexander V Rubanovich
Journal:  Tumour Biol       Date:  2013-05-10

Review 3.  Childhood brain tumor epidemiology: a brain tumor epidemiology consortium review.

Authors:  Kimberly J Johnson; Jennifer Cullen; Jill S Barnholtz-Sloan; Quinn T Ostrom; Chelsea E Langer; Michelle C Turner; Roberta McKean-Cowdin; James L Fisher; Philip J Lupo; Sonia Partap; Judith A Schwartzbaum; Michael E Scheurer
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2014-09-05       Impact factor: 4.254

4.  Asymmetry in family history implicates nonstandard genetic mechanisms: application to the genetics of breast cancer.

Authors:  Clarice R Weinberg; Min Shi; Lisa A DeRoo; Jack A Taylor; Dale P Sandler; David M Umbach
Journal:  PLoS Genet       Date:  2014-03-20       Impact factor: 5.917

5.  Assessment of interaction between maternal polycyclic aromatic hydrocarbons exposure and genetic polymorphisms on the risk of congenital heart diseases.

Authors:  Nana Li; Yi Mu; Zhen Liu; Ying Deng; Yixiong Guo; Xuejuan Zhang; Xiaohong Li; Ping Yu; Yanping Wang; Jun Zhu
Journal:  Sci Rep       Date:  2018-02-15       Impact factor: 4.379

6.  The effect on congenital heart diseases of maternal EPHX1 polymorphisms modified by polycyclic aromatic hydrocarbons exposure.

Authors:  Jing Tao; Nana Li; Zhen Liu; Ying Deng; Xiaohong Li; Ming Chen; Jing Yu; Jun Zhu; Ping Yu; Yanping Wang
Journal:  Medicine (Baltimore)       Date:  2019-07       Impact factor: 1.817

7.  Using a Bayesian hierarchical model for identifying single nucleotide polymorphisms associated with childhood acute lymphoblastic leukemia risk in case-parent triads.

Authors:  Ying Cao; Philip J Lupo; Michael D Swartz; Darryl Nousome; Michael E Scheurer
Journal:  PLoS One       Date:  2013-12-19       Impact factor: 3.240

  7 in total

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