| Literature DB >> 22988072 |
Mariano Barbieri1, Mita Chotalia, James Fraser, Liron-Mark Lavitas, Josée Dostie, Ana Pombo, Mario Nicodemi.
Abstract
Chromatin has a complex spatial organization in the cell nucleus that serves vital functional purposes. A variety of chromatin folding conformations has been detected by single-cell imaging and chromosome conformation capture-based approaches. However, a unified quantitative framework describing spatial chromatin organization is still lacking. Here, we explore the "strings and binders switch" model to explain the origin and variety of chromatin behaviors that coexist and dynamically change within living cells. This simple polymer model recapitulates the scaling properties of chromatin folding reported experimentally in different cellular systems, the fractal state of chromatin, the processes of domain formation, and looping out. Additionally, the strings and binders switch model reproduces the recently proposed "fractal-globule" model, but only as one of many possible transient conformations.Entities:
Mesh:
Substances:
Year: 2012 PMID: 22988072 PMCID: PMC3479593 DOI: 10.1073/pnas.1204799109
Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN: 0027-8424 Impact factor: 11.205