Literature DB >> 22974724

Structure-guided engineering of Lactococcus lactis alcohol dehydrogenase LlAdhA for improved conversion of isobutyraldehyde to isobutanol.

Xiang Liu1, Sabine Bastian, Christopher D Snow, Eric M Brustad, Tatyana E Saleski, Jian-He Xu, Peter Meinhold, Frances H Arnold.   

Abstract

We have determined the X-ray crystal structures of the NADH-dependent alcohol dehydrogenase LlAdhA from Lactococcus lactis and its laboratory-evolved variant LlAdhA(RE1) at 1.9Å and 2.5Å resolution, respectively. LlAdhA(RE1), which contains three amino acid mutations (Y50F, I212T, and L264V), was engineered to increase the microbial production of isobutanol (2-methylpropan-1-ol) from isobutyraldehyde (2-methylpropanal). Structural comparison of LlAdhA and LlAdhA(RE1) indicates that the enhanced activity on isobutyraldehyde stems from increases in the protein's active site size, hydrophobicity, and substrate access. Further structure-guided mutagenesis generated a quadruple mutant (Y50F/N110S/I212T/L264V), whose KM for isobutyraldehyde is ∼17-fold lower and catalytic efficiency (kcat/KM) is ∼160-fold higher than wild-type LlAdhA. Combining detailed structural information and directed evolution, we have achieved significant improvements in non-native alcohol dehydrogenase activity that will facilitate the production of next-generation fuels such as isobutanol from renewable resources.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22974724      PMCID: PMC3542407          DOI: 10.1016/j.jbiotec.2012.08.008

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  50 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-14       Impact factor: 11.205

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Journal:  Biochemistry       Date:  2005-09-27       Impact factor: 3.162

Review 3.  Evolvability.

Authors:  M Kirschner; J Gerhart
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

4.  Engineering Bacillus subtilis for isobutanol production by heterologous Ehrlich pathway construction and the biosynthetic 2-ketoisovalerate precursor pathway overexpression.

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Journal:  Appl Microbiol Biotechnol       Date:  2011-04-28       Impact factor: 4.813

5.  Structures of horse liver alcohol dehydrogenase complexed with NAD+ and substituted benzyl alcohols.

Authors:  S Ramaswamy; H Eklund; B V Plapp
Journal:  Biochemistry       Date:  1994-05-03       Impact factor: 3.162

6.  Crystal structure and amide H/D exchange of binary complexes of alcohol dehydrogenase from Bacillus stearothermophilus: insight into thermostability and cofactor binding.

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Journal:  Biochemistry       Date:  2004-05-11       Impact factor: 3.162

7.  The ternary complex of Pseudomonas aeruginosa alcohol dehydrogenase with NADH and ethylene glycol.

Authors:  Inna Levin; Gal Meiri; Moshe Peretz; Yigal Burstein; Felix Frolow
Journal:  Protein Sci       Date:  2004-06       Impact factor: 6.725

Review 8.  Medium- and short-chain dehydrogenase/reductase gene and protein families : The role of zinc for alcohol dehydrogenase structure and function.

Authors:  D S Auld; T Bergman
Journal:  Cell Mol Life Sci       Date:  2008-12       Impact factor: 9.261

Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Active site dynamics in the zinc-dependent medium chain alcohol dehydrogenase superfamily.

Authors:  Patrick J Baker; K Linda Britton; Martin Fisher; Julia Esclapez; Carmen Pire; Maria Jose Bonete; Juan Ferrer; David W Rice
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-08       Impact factor: 11.205

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  4 in total

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Journal:  ACS Nano       Date:  2017-11-20       Impact factor: 15.881

2.  Mutations in adenine-binding pockets enhance catalytic properties of NAD(P)H-dependent enzymes.

Authors:  J K B Cahn; A Baumschlager; S Brinkmann-Chen; F H Arnold
Journal:  Protein Eng Des Sel       Date:  2015-10-27       Impact factor: 1.650

3.  Combinatorial application of two aldehyde oxidoreductases on isobutanol production in the presence of furfural.

Authors:  Hyung-Min Seo; Jong-Min Jeon; Ju Hee Lee; Hun-Suk Song; Han-Byul Joo; Sung-Hee Park; Kwon-Young Choi; Yong Hyun Kim; Kyungmoon Park; Jungoh Ahn; Hongweon Lee; Yung-Hun Yang
Journal:  J Ind Microbiol Biotechnol       Date:  2015-12-11       Impact factor: 3.346

4.  Comparative functional genomics identifies an iron-limited bottleneck in a Saccharomyces cerevisiae strain with a cytosolic-localized isobutanol pathway.

Authors:  Francesca V Gambacorta; Ellen R Wagner; Tyler B Jacobson; Mary Tremaine; Laura K Muehlbauer; Mick A McGee; Justin J Baerwald; Russell L Wrobel; John F Wolters; Mike Place; Joshua J Dietrich; Dan Xie; Jose Serate; Shabda Gajbhiye; Lisa Liu; Maikayeng Vang-Smith; Joshua J Coon; Yaoping Zhang; Audrey P Gasch; Daniel Amador-Noguez; Chris Todd Hittinger; Trey K Sato; Brian F Pfleger
Journal:  Synth Syst Biotechnol       Date:  2022-03-18
  4 in total

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