Literature DB >> 22971440

Lipidomic profiling of model organisms and the world's major pathogens.

Emilie Layre1, D Branch Moody.   

Abstract

Lipidomics is a subspecialty of metabolomics that focuses on water insoluble metabolites that form membrane barriers. Most lipidomic databases catalog lipids from common model organisms, like humans or Escherichia coli. However, model organisms' lipid profiles show surprisingly little overlap with those of specialized pathogens, creating the need for organism-specific lipidomic databases. Here we review rapid progress in lipidomic platform development with regard to chromatography, detection and bioinformatics. We emphasize new methods of comparative lipidomics, which use aligned datasets to identify lipids changed after introducing a biological variable. These new methods provide an unprecedented ability to broadly and quantitatively describe lipidic change during biological processes and identify changed lipids with low error rates.
Copyright © 2012 Elsevier Masson SAS. All rights reserved.

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Year:  2012        PMID: 22971440      PMCID: PMC3988492          DOI: 10.1016/j.biochi.2012.08.012

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  63 in total

1.  Top-down lipidomic screens by multivariate analysis of high-resolution survey mass spectra.

Authors:  Dominik Schwudke; J Thomas Hannich; Vineeth Surendranath; Vinciane Grimard; Thomas Moehring; Lyle Burton; Teymuras Kurzchalia; Andrej Shevchenko
Journal:  Anal Chem       Date:  2007-05-03       Impact factor: 6.986

2.  Subcellular organelle lipidomics in TLR-4-activated macrophages.

Authors:  Alexander Y Andreyev; Eoin Fahy; Ziqiang Guan; Samuel Kelly; Xiang Li; Jeffrey G McDonald; Stephen Milne; David Myers; Hyejung Park; Andrea Ryan; Bonne M Thompson; Elaine Wang; Yihua Zhao; H Alex Brown; Alfred H Merrill; Christian R H Raetz; David W Russell; Shankar Subramaniam; Edward A Dennis
Journal:  J Lipid Res       Date:  2010-06-23       Impact factor: 5.922

Review 3.  Cellular lipidomics.

Authors:  Gerrit van Meer
Journal:  EMBO J       Date:  2005-09-01       Impact factor: 11.598

4.  Lipidomic discovery of deoxysiderophores reveals a revised mycobactin biosynthesis pathway in Mycobacterium tuberculosis.

Authors:  Cressida A Madigan; Tan-Yun Cheng; Emilie Layre; David C Young; Matthew J McConnell; C Anthony Debono; Jeffrey P Murry; Jun-Rong Wei; Clifton E Barry; G Marcela Rodriguez; Isamu Matsunaga; Eric J Rubin; D Branch Moody
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-09       Impact factor: 11.205

5.  Profiling of lipids in Leishmania donovani using hydrophilic interaction chromatography in combination with Fourier transform mass spectrometry.

Authors:  Liang Zheng; Ruben T'Kind; Saskia Decuypere; Simona John von Freyend; Graham H Coombs; David G Watson
Journal:  Rapid Commun Mass Spectrom       Date:  2010-07-30       Impact factor: 2.419

6.  Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry.

Authors:  Christer S Ejsing; Julio L Sampaio; Vineeth Surendranath; Eva Duchoslav; Kim Ekroos; Robin W Klemm; Kai Simons; Andrej Shevchenko
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-27       Impact factor: 11.205

Review 7.  Algorithms for automatic processing of data from mass spectrometric analyses of lipids.

Authors:  Haowei Song; Jack Ladenson; John Turk
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2008-12-25       Impact factor: 3.205

Review 8.  Shotgun lipidomics of neutral lipids as an enabling technology for elucidation of lipid-related diseases.

Authors:  Richard W Gross; Xianlin Han
Journal:  Am J Physiol Endocrinol Metab       Date:  2009-01-06       Impact factor: 4.310

9.  Comparative lipidomics of azole sensitive and resistant clinical isolates of Candida albicans reveals unexpected diversity in molecular lipid imprints.

Authors:  Ashutosh Singh; Rajendra Prasad
Journal:  PLoS One       Date:  2011-04-29       Impact factor: 3.240

Review 10.  Virus entry: open sesame.

Authors:  Mark Marsh; Ari Helenius
Journal:  Cell       Date:  2006-02-24       Impact factor: 41.582

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  15 in total

1.  Lipid Profiling of In Vitro Cell Models of Adipogenic Differentiation: Relationships With Mouse Adipose Tissues.

Authors:  Lucy Liaw; Igor Prudovsky; Robert A Koza; Rea V Anunciado-Koza; Matthew E Siviski; Volkhard Lindner; Robert E Friesel; Clifford J Rosen; Paul R S Baker; Brigitte Simons; Calvin P H Vary
Journal:  J Cell Biochem       Date:  2016-03-16       Impact factor: 4.429

Review 2.  Metabolomics: Applications and Promise in Mycobacterial Disease.

Authors:  Mehdi Mirsaeidi; Mohammad Mehdi Banoei; Brent W Winston; Dean E Schraufnagel
Journal:  Ann Am Thorac Soc       Date:  2015-09

3.  Lipid specific molecular ion emission as a function of the primary ion characteristics in TOF-SIMS.

Authors:  Kendra J Adams; John Daniel DeBord; Francisco Fernandez-Lima
Journal:  J Vac Sci Technol B Nanotechnol Microelectron       Date:  2016-08-24

4.  Changes in lipid distribution in E. coli strains in response to norfloxacin.

Authors:  Emily R Schenk; Frederic Nau; Christopher J Thompson; Yuk-Ching Tse-Dinh; Francisco Fernandez-Lima
Journal:  J Mass Spectrom       Date:  2015-01       Impact factor: 1.982

Review 5.  Hijacking and Use of Host Lipids by Intracellular Pathogens.

Authors:  Alvaro Toledo; Jorge L Benach
Journal:  Microbiol Spectr       Date:  2015-12

Review 6.  Nutritional lipidomics: molecular metabolism, analytics, and diagnostics.

Authors:  Jennifer T Smilowitz; Angela M Zivkovic; Yu-Jui Yvonne Wan; Steve M Watkins; Malin L Nording; Bruce D Hammock; J Bruce German
Journal:  Mol Nutr Food Res       Date:  2013-07-01       Impact factor: 5.914

7.  Rifampin Resistance Mutations Are Associated with Broad Chemical Remodeling of Mycobacterium tuberculosis.

Authors:  Nivedita Lahiri; Rupal R Shah; Emilie Layre; David Young; Chris Ford; Megan B Murray; Sarah M Fortune; D Branch Moody
Journal:  J Biol Chem       Date:  2016-05-10       Impact factor: 5.157

8.  Measuring the Global Substrate Specificity of Mycobacterial Serine Hydrolases Using a Library of Fluorogenic Ester Substrates.

Authors:  Braden Bassett; Brent Waibel; Alex White; Heather Hansen; Dominique Stephens; Andrew Koelper; Erik M Larsen; Charles Kim; Adam Glanzer; Luke D Lavis; Geoffrey C Hoops; R Jeremy Johnson
Journal:  ACS Infect Dis       Date:  2018-04-16       Impact factor: 5.084

9.  Pathogenic nontuberculous mycobacteria resist and inactivate cathelicidin: implication of a novel role for polar mycobacterial lipids.

Authors:  Jennifer R Honda; Tamara Hess; Kenneth C Malcolm; Alida R Ovrutsky; Xiyuan Bai; Vida R Irani; Karen M Dobos; Edward D Chan; Sonia C Flores
Journal:  PLoS One       Date:  2015-05-18       Impact factor: 3.240

10.  Monstrous Mycobacterial Lipids.

Authors:  Jessica Seeliger; D Branch Moody
Journal:  Cell Chem Biol       Date:  2016-02-18       Impact factor: 9.039

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