Literature DB >> 22969617

3,3'-(Ethane-1,2-diyl)bis(6-meth-oxy-3,4-dihydro-2H-1,3-benzoxazine) mono-hydrate.

Augusto Rivera, Jairo Camacho, Jaime Ríos-Motta, Monika Kučeraková, Michal Dušek.   

Abstract

The asymmetric unit of the title compound, C(20)H(24)N(2)O(4)·H(2)O, contains one half-organic mol-ecule (an inversion centre generates the other half of the mol-ecule) and a half-mol-ecule of water (the O atom has site symmetry 2). The near planarity of the fused-benzene ring is illustrated by the very small deviations of all the atoms from the plane [largest deviation = 0.0092 (11) Å. The six-membered N,O-containing ring adopts a half-chair conformation. The observed N-CH(2) and CH(2)-O bond lengths can be correlated to the manifestation of an anomeric effect in the N-CH(2)-O unit. In the crystal, the mol-ecules are connected into zigzag chains parallel to [001] through O-H⋯N hydrogen bonds formed between the oxazinic N atom and the solvent water mol-ecule. The chains are consolidated by C-H⋯O inter-actions.

Entities:  

Year:  2012        PMID: 22969617      PMCID: PMC3435746          DOI: 10.1107/S1600536812035519

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Rivera et al. (2012 ▶, 2011 ▶, 2010 ▶). For the preparation of the title compound, see: Rivera et al. (1989 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C20H24N2O4·H2O M = 374.4 Monoclinic, a = 30.2999 (9) Å b = 5.2132 (2) Å c = 11.6058 (4) Å β = 91.153 (2)° V = 1832.87 (11) Å3 Z = 4 Cu Kα radiation μ = 0.80 mm−1 T = 120 K 0.17 × 0.13 × 0.13 mm

Data collection

Oxford Diffraction Xcalibur Atlas Gemini ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.104, T max = 1 18257 measured reflections 1639 independent reflections 1440 reflections with I > 3σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.094 S = 1.75 1639 reflections 127 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.14 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: Superflip (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: JANA2006 (Petříček et al., 2006 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: JANA2006. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812035519/bx2424sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035519/bx2424Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812035519/bx2424Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H24N2O4·H2OF(000) = 800
Mr = 374.4Dx = 1.357 Mg m3
Monoclinic, C2/cCu Kα radiation, λ = 1.5418 Å
Hall symbol: -C 2ycCell parameters from 10577 reflections
a = 30.2999 (9) Åθ = 2.9–67.0°
b = 5.2132 (2) ŵ = 0.80 mm1
c = 11.6058 (4) ÅT = 120 K
β = 91.153 (2)°Prism, white
V = 1832.87 (11) Å30.17 × 0.13 × 0.13 mm
Z = 4
Oxford Diffraction Xcalibur Atlas Gemini ultra diffractometer1639 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source1440 reflections with I > 3σ(I)
Mirror monochromatorRint = 0.033
Detector resolution: 10.3784 pixels mm-1θmax = 67.2°, θmin = 2.9°
ω scansh = −36→36
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)k = −6→6
Tmin = 0.104, Tmax = 1l = −13→13
18257 measured reflections
Refinement on F2H atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.030Weighting scheme based on measured s.u.'s w = 1/(σ2(I) + 0.0016I2)
wR(F2) = 0.094(Δ/σ)max = 0.015
S = 1.75Δρmax = 0.17 e Å3
1639 reflectionsΔρmin = −0.14 e Å3
127 parametersExtinction correction: B-C type 1 Gaussian isotropic (Becker & Coppens, 1974)
0 restraintsExtinction coefficient: 1300 (300)
49 constraints
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement.The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program.
xyzUiso*/Ueq
O10.90016 (2)0.11497 (15)0.06702 (6)0.0199 (2)
O20.80451 (3)−0.57728 (15)−0.19811 (7)0.0218 (3)
O30.50.0044 (2)0.250.0278 (4)
N10.95328 (3)0.15870 (18)−0.08373 (7)0.0175 (3)
C10.92150 (3)0.0638 (2)−0.17210 (9)0.0187 (3)
C20.98132 (3)−0.0506 (2)−0.03816 (9)0.0185 (3)
C30.87593 (3)−0.0523 (2)−0.00091 (9)0.0170 (3)
C40.85915 (3)−0.2627 (2)−0.18039 (9)0.0170 (3)
C50.88428 (3)−0.0852 (2)−0.11834 (9)0.0164 (3)
C60.82677 (3)−0.4068 (2)−0.12743 (9)0.0177 (3)
C70.84416 (4)−0.1983 (2)0.05238 (9)0.0198 (3)
C80.81931 (4)−0.3764 (2)−0.01008 (10)0.0200 (3)
C90.92843 (3)0.2868 (2)0.00424 (9)0.0179 (3)
C100.77298 (4)−0.7400 (2)−0.14564 (10)0.0260 (4)
H1c10.936552−0.044083−0.2255990.0225*
H2c10.9095370.206326−0.2148130.0225*
H1c20.993326−0.145584−0.1010790.0222*
H2c20.963614−0.1674360.0051010.0222*
H1c40.864263−0.286099−0.2610760.0205*
H1c70.839223−0.1763960.133230.0237*
H1c80.79727−0.4773660.0271910.024*
H1c90.9483840.3711780.057160.0215*
H2c90.9109240.420868−0.0302570.0215*
H1c100.76001−0.851305−0.202840.0312*
H2c100.787328−0.841082−0.0867760.0312*
H3c100.750337−0.637226−0.1119090.0312*
H1o30.4874 (5)0.112 (3)0.3020 (13)0.0334*
U11U22U33U12U13U23
O10.0221 (4)0.0216 (5)0.0160 (4)−0.0038 (3)0.0011 (3)−0.0019 (3)
O20.0213 (4)0.0237 (5)0.0205 (4)−0.0064 (3)−0.0002 (3)−0.0021 (3)
O30.0369 (7)0.0197 (7)0.0274 (6)00.0112 (5)0
N10.0171 (4)0.0186 (5)0.0167 (4)−0.0008 (4)−0.0019 (3)−0.0001 (4)
C10.0183 (5)0.0233 (6)0.0146 (5)−0.0022 (5)−0.0014 (4)0.0015 (4)
C20.0173 (5)0.0175 (6)0.0208 (6)0.0007 (4)−0.0013 (4)−0.0009 (4)
C30.0168 (5)0.0171 (6)0.0171 (6)0.0027 (4)−0.0018 (4)−0.0008 (4)
C40.0174 (5)0.0197 (6)0.0140 (5)0.0027 (4)−0.0007 (4)0.0007 (4)
C50.0151 (5)0.0175 (6)0.0166 (5)0.0025 (4)−0.0010 (4)0.0034 (4)
C60.0161 (5)0.0173 (6)0.0196 (6)0.0017 (4)−0.0026 (4)0.0001 (4)
C70.0209 (5)0.0235 (6)0.0150 (5)0.0018 (5)0.0022 (4)0.0008 (4)
C80.0182 (5)0.0212 (6)0.0208 (6)−0.0011 (4)0.0031 (4)0.0033 (4)
C90.0179 (5)0.0162 (6)0.0195 (5)−0.0004 (4)−0.0004 (4)0.0000 (4)
C100.0249 (6)0.0251 (7)0.0279 (6)−0.0096 (5)−0.0007 (5)0.0007 (5)
O1—C31.3776 (13)C3—C51.4016 (15)
O1—C91.4463 (13)C3—C71.3827 (15)
O2—C61.3765 (13)C4—C51.3902 (15)
O2—C101.4234 (15)C4—C61.3890 (15)
O3—H1o30.914 (15)C4—H1c40.96
O3—H1o3i0.914 (15)C6—C81.3941 (15)
N1—C11.4780 (13)C7—C81.3903 (16)
N1—C21.4743 (14)C7—H1c70.96
N1—C91.4445 (14)C8—H1c80.96
C1—C51.5143 (15)C9—H1c90.96
C1—H1c10.96C9—H2c90.96
C1—H2c10.96C10—H1c100.96
C2—C2ii1.5181 (14)C10—H2c100.96
C2—H1c20.96C10—H3c100.96
C2—H2c20.96
C3—O1—C9114.70 (8)C1—C5—C3119.23 (9)
C6—O2—C10117.04 (8)C1—C5—C4122.19 (9)
H1o3—O3—H1o3i104.2 (14)C3—C5—C4118.52 (10)
C1—N1—C2111.35 (9)O2—C6—C4115.30 (9)
C1—N1—C9107.66 (8)O2—C6—C8124.65 (10)
C2—N1—C9113.16 (8)C4—C6—C8120.04 (10)
N1—C1—C5111.48 (8)C3—C7—C8120.60 (10)
N1—C1—H1c1109.47C3—C7—H1c7119.7
N1—C1—H2c1109.47C8—C7—H1c7119.7
C5—C1—H1c1109.47C6—C8—C7119.25 (10)
C5—C1—H2c1109.47C6—C8—H1c8120.38
H1c1—C1—H2c1107.39C7—C8—H1c8120.38
N1—C2—C2ii111.70 (9)O1—C9—N1113.10 (9)
N1—C2—H1c2109.47O1—C9—H1c9109.47
N1—C2—H2c2109.47O1—C9—H2c9109.47
C2ii—C2—H1c2109.47N1—C9—H1c9109.47
C2ii—C2—H2c2109.47N1—C9—H2c9109.47
H1c2—C2—H2c2107.15H1c9—C9—H2c9105.58
O1—C3—C5121.97 (9)O2—C10—H1c10109.47
O1—C3—C7117.40 (9)O2—C10—H2c10109.47
C5—C3—C7120.56 (10)O2—C10—H3c10109.47
C5—C4—C6121.01 (10)H1c10—C10—H2c10109.47
C5—C4—H1c4119.49H1c10—C10—H3c10109.47
C6—C4—H1c4119.5H2c10—C10—H3c10109.47
D—H···AD—HH···AD···AD—H···A
C4—H1c4···O1iii0.962.463.2982 (13)145.91
O3—H1o3···N1iv0.914 (15)2.076 (15)2.9870 (12)174.8 (13)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H1c4⋯O1i 0.962.463.2982 (13)145.91
O3—H1o3⋯N1ii 0.914 (15)2.076 (15)2.9870 (12)174.8 (13)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  3,3'-Ethyl-enebis(3,4-dihydro-6-chloro-2H-1,3-benzoxazine).

Authors:  Augusto Rivera; Jicli José Rojas; Jaime Ríos-Motta; Michal Dušek; Karla Fejfarová
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-21

2.  3,3'-(Ethane-1,2-di-yl)bis-(6-methyl-3,4-dihydro-2H-1,3-benzoxazine).

Authors:  Augusto Rivera; Jairo Camacho; Jaime Ríos-Motta; Michaela Pojarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-13

3.  3,3'-(Ethane-1,2-di-yl)bis-(3,4-dihydro-2H-1,3-benzoxazine).

Authors:  Augusto Rivera; Jairo Camacho; Jaime Ríos-Motta; Karla Fejfarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-17
  3 in total
  3 in total

1.  Crystal structure of 1,2-bis-(6-bromo-3,4-dihydro-2H-benz[e][1,3]oxazin-3-yl)ethane: a bromine-containing bis-benzoxazine.

Authors:  Augusto Rivera; Jicli José' Rojas; Jaime Ríos-Motta; Michael Bolte
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-10-25

2.  Crystal structure and C-H⋯F hydrogen bonding in the fluorinated bis-benzoxazine: 3,3'-(ethane-1,2-di-yl)bis-(6-fluoro-3,4-di-hydro-2H-1,3-benzoxazine).

Authors:  Augusto Rivera; Jicli José Rojas; Jaime Ríos-Motta; Michael Bolte
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-09-30

3.  C-I⋯N short contacts as tools for the construction of the crystal packing in the crystal structure of 3,3'-(ethane-1,2-di-yl)bis-(6-iodo-3,4-di-hydro-2H-1,3-benzoxazine).

Authors:  Augusto Rivera; Jicli José Rojas; Jaime Ríos-Motta; Michael Bolte
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-04-07
  3 in total

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