| Literature DB >> 22969616 |
Abstract
In the asymmetric unit of the title salt, C(6)Entities:
Year: 2012 PMID: 22969616 PMCID: PMC3435745 DOI: 10.1107/S1600536812035507
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H7N2O+·C2Cl3O2− | |
| Monoclinic, | Mo |
| Hall symbol: P -2yc | Cell parameters from 4989 reflections |
| θ = 3.0–30.3° | |
| µ = 0.78 mm−1 | |
| β = 90.240 (2)° | Cube, colourless |
| 0.2 × 0.2 × 0.2 mm | |
| Agilent SuperNova, Dual, Cu at zero, Atlas diffractometer | 5195 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 4452 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.4933 pixels mm-1 | θmax = 27.5°, θmin = 3.0° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 11114 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 5195 reflections | Δρmax = 0.53 e Å−3 |
| 289 parameters | Δρmin = −0.47 e Å−3 |
| 2 restraints | Absolute structure: Flack (1983), 2512 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.08 (12) |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.10761 (17) | 0.0588 (2) | 0.78518 (16) | 0.0826 (5) | |
| Cl2 | −0.0364 (2) | 0.03005 (15) | 0.98391 (14) | 0.0768 (5) | |
| Cl3 | −0.18351 (17) | 0.0792 (2) | 0.78632 (16) | 0.0819 (5) | |
| Cl4 | 0.3217 (3) | 0.0487 (2) | 0.5048 (3) | 0.1287 (12) | |
| Cl5 | 0.4613 (3) | 0.04358 (18) | 0.70263 (17) | 0.0950 (7) | |
| Cl6 | 0.6112 (3) | 0.0464 (2) | 0.5097 (3) | 0.1206 (10) | |
| N1 | 0.9738 (5) | 0.3469 (4) | 0.5899 (3) | 0.0465 (9) | |
| H1A | 0.9911 | 0.3487 | 0.6573 | 0.07* | |
| N2 | 0.9725 (5) | 0.3126 (5) | 0.1897 (3) | 0.0545 (11) | |
| H2A | 0.9523 | 0.3112 | 0.1228 | 0.082* | |
| H2B | 1.0545 | 0.2975 | 0.21 | 0.082* | |
| N3 | 0.4737 (5) | 0.6594 (5) | 0.3579 (3) | 0.0489 (10) | |
| H3A | 0.4908 | 0.6608 | 0.2906 | 0.073* | |
| N4 | 0.4753 (5) | 0.6746 (5) | 0.7577 (3) | 0.0519 (10) | |
| H4A | 0.4549 | 0.6785 | 0.8243 | 0.078* | |
| H4B | 0.5587 | 0.6786 | 0.7384 | 0.078* | |
| O1 | −0.0643 (6) | 0.3280 (4) | 0.9614 (3) | 0.0789 (15) | |
| O2 | 0.0158 (5) | 0.3511 (5) | 0.7986 (3) | 0.0713 (13) | |
| O3 | 0.5208 (6) | 0.3362 (5) | 0.6487 (3) | 0.0713 (12) | |
| O4 | 0.4394 (7) | 0.3324 (4) | 0.4841 (3) | 0.0834 (16) | |
| O5 | 0.7614 (5) | 0.3595 (9) | 0.2357 (4) | 0.116 (3) | |
| O6 | 0.2588 (5) | 0.6567 (10) | 0.7106 (4) | 0.138 (3) | |
| C1 | 1.0769 (5) | 0.3404 (6) | 0.5206 (4) | 0.0512 (12) | |
| H1 | 1.1657 | 0.3372 | 0.5456 | 0.061* | |
| C2 | 1.0507 (5) | 0.3384 (6) | 0.4112 (4) | 0.0451 (10) | |
| H2 | 1.1213 | 0.3352 | 0.3623 | 0.054* | |
| C3 | 0.9178 (5) | 0.3415 (5) | 0.3768 (4) | 0.0410 (9) | |
| C4 | 0.8152 (5) | 0.3479 (5) | 0.4506 (4) | 0.0471 (10) | |
| H4 | 0.7253 | 0.3503 | 0.4283 | 0.057* | |
| C5 | 0.8467 (6) | 0.3506 (6) | 0.5575 (4) | 0.0555 (13) | |
| H5 | 0.7775 | 0.3551 | 0.6076 | 0.067* | |
| C6 | 0.8784 (6) | 0.3376 (6) | 0.2605 (4) | 0.0538 (13) | |
| C7 | 0.5779 (6) | 0.6614 (6) | 0.4269 (4) | 0.0519 (12) | |
| H7 | 0.6667 | 0.6613 | 0.4026 | 0.062* | |
| C8 | 0.5502 (5) | 0.6637 (5) | 0.5346 (4) | 0.0470 (11) | |
| H8 | 0.6208 | 0.6664 | 0.5839 | 0.056* | |
| C9 | 0.4176 (5) | 0.6621 (5) | 0.5696 (4) | 0.0418 (10) | |
| C10 | 0.3170 (6) | 0.6561 (6) | 0.4940 (4) | 0.0543 (12) | |
| H10 | 0.2271 | 0.6525 | 0.5155 | 0.065* | |
| C11 | 0.3464 (6) | 0.6552 (6) | 0.3887 (4) | 0.0556 (13) | |
| H11 | 0.2771 | 0.6518 | 0.3382 | 0.067* | |
| C12 | 0.3792 (5) | 0.6626 (7) | 0.6854 (4) | 0.0558 (13) | |
| C13 | −0.0250 (5) | 0.2831 (5) | 0.8761 (3) | 0.0436 (10) | |
| C14 | −0.0344 (5) | 0.1177 (5) | 0.8593 (4) | 0.0481 (10) | |
| C15 | 0.4722 (5) | 0.2781 (5) | 0.5682 (3) | 0.0419 (9) | |
| C16 | 0.4658 (5) | 0.1124 (5) | 0.5706 (4) | 0.0463 (10) |
| Cl1 | 0.0647 (9) | 0.0950 (12) | 0.0882 (12) | 0.0167 (8) | 0.0213 (8) | −0.0217 (10) |
| Cl2 | 0.1036 (12) | 0.0537 (7) | 0.0730 (10) | 0.0026 (8) | 0.0071 (9) | 0.0188 (7) |
| Cl3 | 0.0599 (8) | 0.1001 (12) | 0.0856 (11) | −0.0164 (8) | −0.0161 (7) | −0.0240 (10) |
| Cl4 | 0.1135 (16) | 0.0708 (11) | 0.201 (3) | −0.0082 (11) | −0.0941 (19) | −0.0250 (14) |
| Cl5 | 0.1471 (19) | 0.0620 (9) | 0.0760 (11) | −0.0091 (10) | 0.0003 (12) | 0.0210 (8) |
| Cl6 | 0.1032 (15) | 0.0709 (12) | 0.188 (3) | 0.0098 (11) | 0.0773 (17) | −0.0256 (14) |
| N1 | 0.066 (3) | 0.049 (2) | 0.0250 (16) | −0.0007 (19) | 0.0018 (17) | 0.0029 (14) |
| N2 | 0.059 (2) | 0.083 (3) | 0.0216 (17) | 0.008 (2) | −0.0014 (16) | −0.0018 (19) |
| N3 | 0.065 (3) | 0.053 (2) | 0.0280 (18) | 0.004 (2) | −0.0005 (17) | 0.0013 (16) |
| N4 | 0.057 (2) | 0.069 (3) | 0.0296 (19) | 0.003 (2) | −0.0002 (17) | −0.0002 (18) |
| O1 | 0.146 (5) | 0.059 (2) | 0.0319 (18) | 0.012 (3) | 0.008 (2) | 0.0011 (16) |
| O2 | 0.116 (4) | 0.071 (3) | 0.0270 (16) | −0.017 (2) | 0.002 (2) | 0.0035 (16) |
| O3 | 0.117 (4) | 0.065 (2) | 0.0324 (18) | −0.017 (2) | 0.004 (2) | −0.0052 (16) |
| O4 | 0.158 (5) | 0.052 (2) | 0.040 (2) | 0.007 (3) | −0.014 (3) | 0.0037 (17) |
| O5 | 0.049 (2) | 0.251 (8) | 0.047 (2) | 0.012 (4) | −0.0102 (19) | 0.015 (4) |
| O6 | 0.051 (3) | 0.312 (11) | 0.051 (3) | −0.018 (4) | 0.011 (2) | 0.008 (4) |
| C1 | 0.047 (2) | 0.067 (3) | 0.039 (2) | 0.005 (2) | −0.005 (2) | 0.001 (2) |
| C2 | 0.040 (2) | 0.065 (3) | 0.030 (2) | 0.003 (2) | 0.0028 (17) | 0.0013 (19) |
| C3 | 0.043 (2) | 0.052 (3) | 0.0288 (18) | −0.0013 (19) | 0.0020 (16) | 0.0073 (16) |
| C4 | 0.040 (2) | 0.057 (3) | 0.044 (2) | 0.001 (2) | 0.0088 (19) | 0.003 (2) |
| C5 | 0.061 (3) | 0.065 (3) | 0.041 (3) | 0.000 (2) | 0.018 (2) | 0.004 (2) |
| C6 | 0.051 (3) | 0.082 (4) | 0.029 (2) | −0.007 (3) | −0.0046 (19) | 0.010 (2) |
| C7 | 0.053 (3) | 0.063 (3) | 0.040 (2) | −0.008 (2) | 0.010 (2) | 0.004 (2) |
| C8 | 0.049 (3) | 0.063 (3) | 0.029 (2) | −0.008 (2) | −0.0054 (19) | 0.0021 (19) |
| C9 | 0.047 (2) | 0.051 (3) | 0.0277 (19) | −0.0028 (19) | −0.0021 (17) | 0.0005 (17) |
| C10 | 0.049 (3) | 0.071 (3) | 0.043 (2) | 0.002 (2) | −0.005 (2) | −0.001 (2) |
| C11 | 0.056 (3) | 0.065 (3) | 0.046 (3) | 0.012 (3) | −0.010 (2) | −0.001 (2) |
| C12 | 0.044 (2) | 0.093 (4) | 0.030 (2) | −0.004 (3) | 0.0067 (19) | 0.003 (2) |
| C13 | 0.056 (2) | 0.046 (2) | 0.028 (2) | −0.001 (2) | −0.0072 (18) | 0.0027 (17) |
| C14 | 0.047 (2) | 0.051 (3) | 0.046 (2) | −0.002 (2) | 0.0039 (19) | −0.006 (2) |
| C15 | 0.058 (2) | 0.044 (2) | 0.0239 (18) | −0.004 (2) | 0.0062 (17) | −0.0036 (17) |
| C16 | 0.044 (2) | 0.048 (2) | 0.047 (2) | 0.001 (2) | 0.0028 (19) | −0.005 (2) |
| Cl1—C14 | 1.774 (5) | O5—C6 | 1.213 (7) |
| Cl2—C14 | 1.766 (5) | O6—C12 | 1.233 (7) |
| Cl3—C14 | 1.768 (5) | C1—C2 | 1.393 (6) |
| Cl4—C16 | 1.748 (5) | C1—H1 | 0.93 |
| Cl5—C16 | 1.777 (6) | C2—C3 | 1.380 (7) |
| Cl6—C16 | 1.743 (5) | C2—H2 | 0.93 |
| N1—C5 | 1.318 (7) | C3—C4 | 1.375 (6) |
| N1—C1 | 1.342 (7) | C3—C6 | 1.505 (6) |
| N1—H1A | 0.86 | C4—C5 | 1.372 (8) |
| N2—C6 | 1.308 (7) | C4—H4 | 0.93 |
| N2—H2A | 0.86 | C5—H5 | 0.93 |
| N2—H2B | 0.86 | C7—C8 | 1.377 (7) |
| N3—C11 | 1.317 (7) | C7—H7 | 0.93 |
| N3—C7 | 1.340 (7) | C8—C9 | 1.382 (7) |
| N3—H3A | 0.86 | C8—H8 | 0.93 |
| N4—C12 | 1.314 (7) | C9—C10 | 1.371 (7) |
| N4—H4A | 0.86 | C9—C12 | 1.499 (6) |
| N4—H4B | 0.86 | C10—C11 | 1.350 (8) |
| O1—C13 | 1.213 (6) | C10—H10 | 0.93 |
| O2—C13 | 1.233 (6) | C11—H11 | 0.93 |
| O3—C15 | 1.242 (6) | C13—C14 | 1.578 (7) |
| O4—C15 | 1.215 (6) | C15—C16 | 1.566 (7) |
| C5—N1—C1 | 121.8 (4) | C7—C8—C9 | 120.2 (4) |
| C5—N1—H1A | 119.1 | C7—C8—H8 | 119.9 |
| C1—N1—H1A | 119.1 | C9—C8—H8 | 119.9 |
| C6—N2—H2A | 120 | C10—C9—C8 | 117.8 (4) |
| C6—N2—H2B | 120 | C10—C9—C12 | 118.8 (4) |
| H2A—N2—H2B | 120 | C8—C9—C12 | 123.4 (4) |
| C11—N3—C7 | 122.9 (4) | C11—C10—C9 | 121.1 (5) |
| C11—N3—H3A | 118.6 | C11—C10—H10 | 119.5 |
| C7—N3—H3A | 118.6 | C9—C10—H10 | 119.5 |
| C12—N4—H4A | 120 | N3—C11—C10 | 119.6 (5) |
| C12—N4—H4B | 120 | N3—C11—H11 | 120.2 |
| H4A—N4—H4B | 120 | C10—C11—H11 | 120.2 |
| N1—C1—C2 | 119.8 (5) | O6—C12—N4 | 121.5 (5) |
| N1—C1—H1 | 120.1 | O6—C12—C9 | 119.7 (5) |
| C2—C1—H1 | 120.1 | N4—C12—C9 | 118.8 (4) |
| C3—C2—C1 | 118.6 (4) | O1—C13—O2 | 128.1 (5) |
| C3—C2—H2 | 120.7 | O1—C13—C14 | 116.4 (4) |
| C1—C2—H2 | 120.7 | O2—C13—C14 | 115.4 (4) |
| C4—C3—C2 | 119.6 (4) | C13—C14—Cl2 | 110.3 (3) |
| C4—C3—C6 | 117.6 (4) | C13—C14—Cl3 | 108.7 (3) |
| C2—C3—C6 | 122.8 (4) | Cl2—C14—Cl3 | 110.3 (3) |
| C5—C4—C3 | 119.5 (5) | C13—C14—Cl1 | 109.5 (3) |
| C5—C4—H4 | 120.3 | Cl2—C14—Cl1 | 109.1 (3) |
| C3—C4—H4 | 120.3 | Cl3—C14—Cl1 | 108.9 (3) |
| N1—C5—C4 | 120.7 (5) | O4—C15—O3 | 128.1 (5) |
| N1—C5—H5 | 119.6 | O4—C15—C16 | 115.3 (4) |
| C4—C5—H5 | 119.6 | O3—C15—C16 | 116.2 (4) |
| O5—C6—N2 | 122.4 (5) | C15—C16—Cl6 | 108.4 (3) |
| O5—C6—C3 | 119.0 (5) | C15—C16—Cl4 | 111.6 (4) |
| N2—C6—C3 | 118.6 (5) | Cl6—C16—Cl4 | 110.0 (3) |
| N3—C7—C8 | 118.4 (5) | C15—C16—Cl5 | 112.6 (3) |
| N3—C7—H7 | 120.8 | Cl6—C16—Cl5 | 107.4 (3) |
| C8—C7—H7 | 120.8 | Cl4—C16—Cl5 | 106.8 (3) |
| C5—N1—C1—C2 | 0.5 (8) | C7—N3—C11—C10 | 1.5 (8) |
| N1—C1—C2—C3 | −0.8 (8) | C9—C10—C11—N3 | 0.4 (9) |
| C1—C2—C3—C4 | 0.7 (8) | C10—C9—C12—O6 | 0.5 (10) |
| C1—C2—C3—C6 | −179.1 (5) | C8—C9—C12—O6 | −177.8 (7) |
| C2—C3—C4—C5 | −0.3 (8) | C10—C9—C12—N4 | −177.1 (6) |
| C6—C3—C4—C5 | 179.6 (5) | C8—C9—C12—N4 | 4.6 (8) |
| C1—N1—C5—C4 | 0.0 (8) | O1—C13—C14—Cl2 | −23.3 (6) |
| C3—C4—C5—N1 | −0.1 (8) | O2—C13—C14—Cl2 | 159.9 (4) |
| C4—C3—C6—O5 | 9.9 (9) | O1—C13—C14—Cl3 | 97.8 (5) |
| C2—C3—C6—O5 | −170.3 (7) | O2—C13—C14—Cl3 | −79.1 (5) |
| C4—C3—C6—N2 | −171.0 (5) | O1—C13—C14—Cl1 | −143.3 (5) |
| C2—C3—C6—N2 | 8.8 (9) | O2—C13—C14—Cl1 | 39.8 (6) |
| C11—N3—C7—C8 | −2.1 (8) | O4—C15—C16—Cl6 | 80.2 (6) |
| N3—C7—C8—C9 | 0.8 (8) | O3—C15—C16—Cl6 | −93.8 (5) |
| C7—C8—C9—C10 | 0.9 (8) | O4—C15—C16—Cl4 | −41.1 (6) |
| C7—C8—C9—C12 | 179.2 (5) | O3—C15—C16—Cl4 | 145.0 (5) |
| C8—C9—C10—C11 | −1.6 (9) | O4—C15—C16—Cl5 | −161.2 (5) |
| C12—C9—C10—C11 | −180.0 (5) | O3—C15—C16—Cl5 | 24.9 (6) |
| H··· | ||||
| N1—H1 | 0.86 | 1.78 | 2.643 (5) | 176 |
| N2—H2 | 0.86 | 2.03 | 2.883 (6) | 170 |
| N2—H2 | 0.86 | 2.06 | 2.854 (7) | 152 |
| N3—H3 | 0.86 | 1.8 | 2.661 (5) | 178 |
| N4—H4 | 0.86 | 2.01 | 2.858 (6) | 169 |
| N4—H4 | 0.86 | 2.03 | 2.858 (7) | 160 |
| C2—H2···O6iii | 0.93 | 2.34 | 3.251 (7) | 166 |
| C5—H5···O3 | 0.93 | 2.6 | 3.422 (8) | 148 |
| C8—H8···O5v | 0.93 | 2.36 | 3.270 (6) | 166 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.86 | 1.78 | 2.643 (5) | 176 |
| N2—H2 | 0.86 | 2.03 | 2.883 (6) | 170 |
| N2—H2 | 0.86 | 2.06 | 2.854 (7) | 152 |
| N3—H3 | 0.86 | 1.8 | 2.661 (5) | 178 |
| N4—H4 | 0.86 | 2.01 | 2.858 (6) | 169 |
| N4—H4 | 0.86 | 2.03 | 2.858 (7) | 160 |
| C2—H2⋯O6iii | 0.93 | 2.34 | 3.251 (7) | 166 |
| C5—H5⋯O3 | 0.93 | 2.6 | 3.422 (8) | 148 |
| C8—H8⋯O5v | 0.93 | 2.36 | 3.270 (6) | 166 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .