Literature DB >> 22969616

4-Carbamoylpyridin-1-ium 2,2,2-trichloro-acetate.

Franc Perdih1.   

Abstract

In the asymmetric unit of the title salt, C(6)n class="Species">H(7)N(2)O(+)·C(2)Cl(3)O(2) (-), there are two crystallographic independent ion pairs. The amide groups of the 4-carbamoylpyridin-1-ium ions are slightly twisted out of the plane of the aromatic ring with C-C-C-N torsion angles of 8.8 (9)° and 4.6 (8)°. In the crystal, the 4-carbamoylpyridin-1-ium ion is N-H⋯O hydrogen bonded to the trichloro-acetate ion via the pyridinium unit and amide group. Layers parallel to the ac plane are formed due to the N-H⋯O hydrogen bonding of the adjacent amide groups of 4-carbamoylpyridin-1-ium ions. Weak C-H⋯O inter-actions also occur.

Entities:  

Year:  2012        PMID: 22969616      PMCID: PMC3435745          DOI: 10.1107/S1600536812035507

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of co-crystals, see: Karki et al. (2009 ▶); Friščić & Jones (2010 ▶). For related structures, see: Das & Baruah (2011 ▶).

Experimental

Crystal data

C6H7N2O+·n class="Chemical">C2Cl3O2 − M = 285.51 Monoclinic, a = 9.8768 (3) Å b = 9.4403 (3) Å c = 12.5157 (3) Å β = 90.240 (2)° V = 1166.95 (6) Å3 Z = 4 Mo Kα radiation μ = 0.78 mm−1 T = 293 K 0.2 × 0.2 × 0.2 mm

Data collection

Agilent SuperNova, Dual, Cu at zero, Atlas diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.860, T max = 0.860 11114 measured reflections 5195 independent reflections 4452 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.069 wR(F 2) = 0.199 S = 1.04 5195 reflections 289 parameters 2 restraints H-atom parameters constrained Δρmax = 0.53 e Å−3 Δρmin = −0.47 e Å−3 Absolute structure: Flack (1983 ▶), 2512 Friedel pairs Flack parameter: 0.08 (12) Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: WinGX publication routines (Farrugia, 1999 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global. DOI: 10.1107/S1600536812035507/bq2374sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035507/bq2374Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812035507/bq2374Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H7N2O+·C2Cl3O2F(000) = 576
Mr = 285.51Dx = 1.625 Mg m3
Monoclinic, PcMo Kα radiation, λ = 0.71073 Å
Hall symbol: P -2ycCell parameters from 4989 reflections
a = 9.8768 (3) Åθ = 3.0–30.3°
b = 9.4403 (3) ŵ = 0.78 mm1
c = 12.5157 (3) ÅT = 293 K
β = 90.240 (2)°Cube, colourless
V = 1166.95 (6) Å30.2 × 0.2 × 0.2 mm
Z = 4
Agilent SuperNova, Dual, Cu at zero, Atlas diffractometer5195 independent reflections
Radiation source: SuperNova (Mo) X-ray Source4452 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.026
Detector resolution: 10.4933 pixels mm-1θmax = 27.5°, θmin = 3.0°
ω scansh = −12→12
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −12→12
Tmin = 0.860, Tmax = 0.860l = −16→16
11114 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.069H-atom parameters constrained
wR(F2) = 0.199w = 1/[σ2(Fo2) + (0.104P)2 + 1.1455P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
5195 reflectionsΔρmax = 0.53 e Å3
289 parametersΔρmin = −0.47 e Å3
2 restraintsAbsolute structure: Flack (1983), 2512 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.08 (12)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.10761 (17)0.0588 (2)0.78518 (16)0.0826 (5)
Cl2−0.0364 (2)0.03005 (15)0.98391 (14)0.0768 (5)
Cl3−0.18351 (17)0.0792 (2)0.78632 (16)0.0819 (5)
Cl40.3217 (3)0.0487 (2)0.5048 (3)0.1287 (12)
Cl50.4613 (3)0.04358 (18)0.70263 (17)0.0950 (7)
Cl60.6112 (3)0.0464 (2)0.5097 (3)0.1206 (10)
N10.9738 (5)0.3469 (4)0.5899 (3)0.0465 (9)
H1A0.99110.34870.65730.07*
N20.9725 (5)0.3126 (5)0.1897 (3)0.0545 (11)
H2A0.95230.31120.12280.082*
H2B1.05450.29750.210.082*
N30.4737 (5)0.6594 (5)0.3579 (3)0.0489 (10)
H3A0.49080.66080.29060.073*
N40.4753 (5)0.6746 (5)0.7577 (3)0.0519 (10)
H4A0.45490.67850.82430.078*
H4B0.55870.67860.73840.078*
O1−0.0643 (6)0.3280 (4)0.9614 (3)0.0789 (15)
O20.0158 (5)0.3511 (5)0.7986 (3)0.0713 (13)
O30.5208 (6)0.3362 (5)0.6487 (3)0.0713 (12)
O40.4394 (7)0.3324 (4)0.4841 (3)0.0834 (16)
O50.7614 (5)0.3595 (9)0.2357 (4)0.116 (3)
O60.2588 (5)0.6567 (10)0.7106 (4)0.138 (3)
C11.0769 (5)0.3404 (6)0.5206 (4)0.0512 (12)
H11.16570.33720.54560.061*
C21.0507 (5)0.3384 (6)0.4112 (4)0.0451 (10)
H21.12130.33520.36230.054*
C30.9178 (5)0.3415 (5)0.3768 (4)0.0410 (9)
C40.8152 (5)0.3479 (5)0.4506 (4)0.0471 (10)
H40.72530.35030.42830.057*
C50.8467 (6)0.3506 (6)0.5575 (4)0.0555 (13)
H50.77750.35510.60760.067*
C60.8784 (6)0.3376 (6)0.2605 (4)0.0538 (13)
C70.5779 (6)0.6614 (6)0.4269 (4)0.0519 (12)
H70.66670.66130.40260.062*
C80.5502 (5)0.6637 (5)0.5346 (4)0.0470 (11)
H80.62080.66640.58390.056*
C90.4176 (5)0.6621 (5)0.5696 (4)0.0418 (10)
C100.3170 (6)0.6561 (6)0.4940 (4)0.0543 (12)
H100.22710.65250.51550.065*
C110.3464 (6)0.6552 (6)0.3887 (4)0.0556 (13)
H110.27710.65180.33820.067*
C120.3792 (5)0.6626 (7)0.6854 (4)0.0558 (13)
C13−0.0250 (5)0.2831 (5)0.8761 (3)0.0436 (10)
C14−0.0344 (5)0.1177 (5)0.8593 (4)0.0481 (10)
C150.4722 (5)0.2781 (5)0.5682 (3)0.0419 (9)
C160.4658 (5)0.1124 (5)0.5706 (4)0.0463 (10)
U11U22U33U12U13U23
Cl10.0647 (9)0.0950 (12)0.0882 (12)0.0167 (8)0.0213 (8)−0.0217 (10)
Cl20.1036 (12)0.0537 (7)0.0730 (10)0.0026 (8)0.0071 (9)0.0188 (7)
Cl30.0599 (8)0.1001 (12)0.0856 (11)−0.0164 (8)−0.0161 (7)−0.0240 (10)
Cl40.1135 (16)0.0708 (11)0.201 (3)−0.0082 (11)−0.0941 (19)−0.0250 (14)
Cl50.1471 (19)0.0620 (9)0.0760 (11)−0.0091 (10)0.0003 (12)0.0210 (8)
Cl60.1032 (15)0.0709 (12)0.188 (3)0.0098 (11)0.0773 (17)−0.0256 (14)
N10.066 (3)0.049 (2)0.0250 (16)−0.0007 (19)0.0018 (17)0.0029 (14)
N20.059 (2)0.083 (3)0.0216 (17)0.008 (2)−0.0014 (16)−0.0018 (19)
N30.065 (3)0.053 (2)0.0280 (18)0.004 (2)−0.0005 (17)0.0013 (16)
N40.057 (2)0.069 (3)0.0296 (19)0.003 (2)−0.0002 (17)−0.0002 (18)
O10.146 (5)0.059 (2)0.0319 (18)0.012 (3)0.008 (2)0.0011 (16)
O20.116 (4)0.071 (3)0.0270 (16)−0.017 (2)0.002 (2)0.0035 (16)
O30.117 (4)0.065 (2)0.0324 (18)−0.017 (2)0.004 (2)−0.0052 (16)
O40.158 (5)0.052 (2)0.040 (2)0.007 (3)−0.014 (3)0.0037 (17)
O50.049 (2)0.251 (8)0.047 (2)0.012 (4)−0.0102 (19)0.015 (4)
O60.051 (3)0.312 (11)0.051 (3)−0.018 (4)0.011 (2)0.008 (4)
C10.047 (2)0.067 (3)0.039 (2)0.005 (2)−0.005 (2)0.001 (2)
C20.040 (2)0.065 (3)0.030 (2)0.003 (2)0.0028 (17)0.0013 (19)
C30.043 (2)0.052 (3)0.0288 (18)−0.0013 (19)0.0020 (16)0.0073 (16)
C40.040 (2)0.057 (3)0.044 (2)0.001 (2)0.0088 (19)0.003 (2)
C50.061 (3)0.065 (3)0.041 (3)0.000 (2)0.018 (2)0.004 (2)
C60.051 (3)0.082 (4)0.029 (2)−0.007 (3)−0.0046 (19)0.010 (2)
C70.053 (3)0.063 (3)0.040 (2)−0.008 (2)0.010 (2)0.004 (2)
C80.049 (3)0.063 (3)0.029 (2)−0.008 (2)−0.0054 (19)0.0021 (19)
C90.047 (2)0.051 (3)0.0277 (19)−0.0028 (19)−0.0021 (17)0.0005 (17)
C100.049 (3)0.071 (3)0.043 (2)0.002 (2)−0.005 (2)−0.001 (2)
C110.056 (3)0.065 (3)0.046 (3)0.012 (3)−0.010 (2)−0.001 (2)
C120.044 (2)0.093 (4)0.030 (2)−0.004 (3)0.0067 (19)0.003 (2)
C130.056 (2)0.046 (2)0.028 (2)−0.001 (2)−0.0072 (18)0.0027 (17)
C140.047 (2)0.051 (3)0.046 (2)−0.002 (2)0.0039 (19)−0.006 (2)
C150.058 (2)0.044 (2)0.0239 (18)−0.004 (2)0.0062 (17)−0.0036 (17)
C160.044 (2)0.048 (2)0.047 (2)0.001 (2)0.0028 (19)−0.005 (2)
Cl1—C141.774 (5)O5—C61.213 (7)
Cl2—C141.766 (5)O6—C121.233 (7)
Cl3—C141.768 (5)C1—C21.393 (6)
Cl4—C161.748 (5)C1—H10.93
Cl5—C161.777 (6)C2—C31.380 (7)
Cl6—C161.743 (5)C2—H20.93
N1—C51.318 (7)C3—C41.375 (6)
N1—C11.342 (7)C3—C61.505 (6)
N1—H1A0.86C4—C51.372 (8)
N2—C61.308 (7)C4—H40.93
N2—H2A0.86C5—H50.93
N2—H2B0.86C7—C81.377 (7)
N3—C111.317 (7)C7—H70.93
N3—C71.340 (7)C8—C91.382 (7)
N3—H3A0.86C8—H80.93
N4—C121.314 (7)C9—C101.371 (7)
N4—H4A0.86C9—C121.499 (6)
N4—H4B0.86C10—C111.350 (8)
O1—C131.213 (6)C10—H100.93
O2—C131.233 (6)C11—H110.93
O3—C151.242 (6)C13—C141.578 (7)
O4—C151.215 (6)C15—C161.566 (7)
C5—N1—C1121.8 (4)C7—C8—C9120.2 (4)
C5—N1—H1A119.1C7—C8—H8119.9
C1—N1—H1A119.1C9—C8—H8119.9
C6—N2—H2A120C10—C9—C8117.8 (4)
C6—N2—H2B120C10—C9—C12118.8 (4)
H2A—N2—H2B120C8—C9—C12123.4 (4)
C11—N3—C7122.9 (4)C11—C10—C9121.1 (5)
C11—N3—H3A118.6C11—C10—H10119.5
C7—N3—H3A118.6C9—C10—H10119.5
C12—N4—H4A120N3—C11—C10119.6 (5)
C12—N4—H4B120N3—C11—H11120.2
H4A—N4—H4B120C10—C11—H11120.2
N1—C1—C2119.8 (5)O6—C12—N4121.5 (5)
N1—C1—H1120.1O6—C12—C9119.7 (5)
C2—C1—H1120.1N4—C12—C9118.8 (4)
C3—C2—C1118.6 (4)O1—C13—O2128.1 (5)
C3—C2—H2120.7O1—C13—C14116.4 (4)
C1—C2—H2120.7O2—C13—C14115.4 (4)
C4—C3—C2119.6 (4)C13—C14—Cl2110.3 (3)
C4—C3—C6117.6 (4)C13—C14—Cl3108.7 (3)
C2—C3—C6122.8 (4)Cl2—C14—Cl3110.3 (3)
C5—C4—C3119.5 (5)C13—C14—Cl1109.5 (3)
C5—C4—H4120.3Cl2—C14—Cl1109.1 (3)
C3—C4—H4120.3Cl3—C14—Cl1108.9 (3)
N1—C5—C4120.7 (5)O4—C15—O3128.1 (5)
N1—C5—H5119.6O4—C15—C16115.3 (4)
C4—C5—H5119.6O3—C15—C16116.2 (4)
O5—C6—N2122.4 (5)C15—C16—Cl6108.4 (3)
O5—C6—C3119.0 (5)C15—C16—Cl4111.6 (4)
N2—C6—C3118.6 (5)Cl6—C16—Cl4110.0 (3)
N3—C7—C8118.4 (5)C15—C16—Cl5112.6 (3)
N3—C7—H7120.8Cl6—C16—Cl5107.4 (3)
C8—C7—H7120.8Cl4—C16—Cl5106.8 (3)
C5—N1—C1—C20.5 (8)C7—N3—C11—C101.5 (8)
N1—C1—C2—C3−0.8 (8)C9—C10—C11—N30.4 (9)
C1—C2—C3—C40.7 (8)C10—C9—C12—O60.5 (10)
C1—C2—C3—C6−179.1 (5)C8—C9—C12—O6−177.8 (7)
C2—C3—C4—C5−0.3 (8)C10—C9—C12—N4−177.1 (6)
C6—C3—C4—C5179.6 (5)C8—C9—C12—N44.6 (8)
C1—N1—C5—C40.0 (8)O1—C13—C14—Cl2−23.3 (6)
C3—C4—C5—N1−0.1 (8)O2—C13—C14—Cl2159.9 (4)
C4—C3—C6—O59.9 (9)O1—C13—C14—Cl397.8 (5)
C2—C3—C6—O5−170.3 (7)O2—C13—C14—Cl3−79.1 (5)
C4—C3—C6—N2−171.0 (5)O1—C13—C14—Cl1−143.3 (5)
C2—C3—C6—N28.8 (9)O2—C13—C14—Cl139.8 (6)
C11—N3—C7—C8−2.1 (8)O4—C15—C16—Cl680.2 (6)
N3—C7—C8—C90.8 (8)O3—C15—C16—Cl6−93.8 (5)
C7—C8—C9—C100.9 (8)O4—C15—C16—Cl4−41.1 (6)
C7—C8—C9—C12179.2 (5)O3—C15—C16—Cl4145.0 (5)
C8—C9—C10—C11−1.6 (9)O4—C15—C16—Cl5−161.2 (5)
C12—C9—C10—C11−180.0 (5)O3—C15—C16—Cl524.9 (6)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2i0.861.782.643 (5)176
N2—H2A···O1ii0.862.032.883 (6)170
N2—H2B···O6iii0.862.062.854 (7)152
N3—H3A···O3iv0.861.82.661 (5)178
N4—H4A···O4v0.862.012.858 (6)169
N4—H4B···O5v0.862.032.858 (7)160
C2—H2···O6iii0.932.343.251 (7)166
C5—H5···O30.932.63.422 (8)148
C8—H8···O5v0.932.363.270 (6)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O2i 0.861.782.643 (5)176
N2—H2A⋯O1ii 0.862.032.883 (6)170
N2—H2B⋯O6iii 0.862.062.854 (7)152
N3—H3A⋯O3iv 0.861.82.661 (5)178
N4—H4A⋯O4v 0.862.012.858 (6)169
N4—H4B⋯O5v 0.862.032.858 (7)160
C2—H2⋯O6iii 0.932.343.251 (7)166
C5—H5⋯O30.932.63.422 (8)148
C8—H8⋯O5v 0.932.363.270 (6)166

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  2 in total

Review 1.  Benefits of cocrystallisation in pharmaceutical materials science: an update.

Authors:  Tomislav Friščić; William Jones
Journal:  J Pharm Pharmacol       Date:  2010-11       Impact factor: 3.765

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.