Literature DB >> 22969610

3-Oxo-3-(piperidin-1-yl)propane-nitrile.

Hoong-Kun Fun, Ching Kheng Quah, Hatem A Abdel-Aziz, Hazem A Ghabbour.   

Abstract

In the title compound, C(8)H(12)N(2)O, the piperidine ring exhibits a chair conformation and its least-squares plane (all atoms) makes a dihedral angle of 32.88 (12)° with the propane-nitrile unit (r.m.s. deviation = 0.001 Å). In the crystal, mol-ecules are linked by C-H⋯O hydrogen bonds, forming chains along [001].

Entities:  

Year:  2012        PMID: 22969610      PMCID: PMC3435739          DOI: 10.1107/S1600536812035015

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For ring conformations, see: Cremer & Pople (1975 ▶). For background to piperidine derivatives, see: Andrews et al. (2008 ▶); Abdel-Aziz & Mekawey (2009 ▶); Abdel-Aziz et al. (2009 ▶, 2011 ▶). For the synthesis, see: Whitehead & Traverso (1955 ▶).

Experimental

Crystal data

C8H12N2O M = 152.20 Monoclinic, a = 9.7106 (2) Å b = 8.9468 (2) Å c = 9.8487 (2) Å β = 101.425 (1)° V = 838.69 (3) Å3 Z = 4 Cu Kα radiation μ = 0.66 mm−1 T = 296 K 0.70 × 0.62 × 0.39 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.656, T max = 0.783 5110 measured reflections 1300 independent reflections 1222 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.128 S = 1.12 1300 reflections 101 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812035015/hb6912sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035015/hb6912Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812035015/hb6912Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H12N2OF(000) = 328
Mr = 152.20Dx = 1.205 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 2826 reflections
a = 9.7106 (2) Åθ = 4.6–70.9°
b = 8.9468 (2) ŵ = 0.66 mm1
c = 9.8487 (2) ÅT = 296 K
β = 101.425 (1)°Block, colourless
V = 838.69 (3) Å30.70 × 0.62 × 0.39 mm
Z = 4
Bruker SMART APEXII CCD diffractometer1300 independent reflections
Radiation source: fine-focus sealed tube1222 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
φ and ω scansθmax = 63.0°, θmin = 4.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→11
Tmin = 0.656, Tmax = 0.783k = −7→10
5110 measured reflectionsl = −11→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.053H-atom parameters constrained
wR(F2) = 0.128w = 1/[σ2(Fo2) + (0.0759P)2 + 0.0948P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max = 0.001
1300 reflectionsΔρmax = 0.20 e Å3
101 parametersΔρmin = −0.30 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.82 (4)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.24331 (12)0.06319 (12)0.22467 (11)0.0473 (4)
N20.08305 (19)0.56540 (17)0.19855 (19)0.0850 (6)
O10.24717 (12)0.26280 (12)0.36568 (9)0.0599 (5)
C10.19317 (15)−0.01701 (16)0.09524 (15)0.0514 (5)
H1A0.14520.05190.02570.062*
H1B0.1266−0.09340.10970.062*
C20.31440 (19)−0.08861 (19)0.04488 (17)0.0637 (5)
H2A0.3752−0.01130.02050.076*
H2B0.2787−0.1468−0.03770.076*
C30.39850 (19)−0.1892 (2)0.15449 (19)0.0683 (6)
H3A0.3414−0.27380.17050.082*
H3B0.4801−0.22690.12240.082*
C40.44535 (18)−0.10440 (19)0.28805 (19)0.0673 (6)
H4A0.4908−0.17290.35940.081*
H4B0.5136−0.02930.27510.081*
C50.32379 (19)−0.0296 (2)0.33513 (16)0.0635 (5)
H5A0.2627−0.10510.36210.076*
H5B0.35900.03220.41550.076*
C60.20841 (13)0.20271 (15)0.25256 (12)0.0425 (5)
C70.11643 (16)0.28844 (15)0.13497 (14)0.0491 (5)
H7A0.15880.28520.05370.059*
H7B0.02500.24100.11160.059*
C80.09924 (16)0.44374 (17)0.17336 (16)0.0558 (5)
U11U22U33U12U13U23
N10.0568 (7)0.0441 (7)0.0387 (7)0.0043 (5)0.0038 (5)0.0000 (4)
N20.0915 (12)0.0557 (10)0.1066 (14)0.0150 (8)0.0165 (9)−0.0146 (8)
O10.0771 (8)0.0609 (8)0.0407 (7)−0.0035 (5)0.0090 (5)−0.0114 (4)
C10.0560 (8)0.0436 (8)0.0495 (8)0.0026 (6)−0.0017 (6)−0.0064 (6)
C20.0770 (11)0.0552 (10)0.0575 (9)0.0141 (7)0.0097 (8)−0.0108 (7)
C30.0657 (10)0.0527 (10)0.0837 (13)0.0142 (7)0.0077 (8)−0.0032 (8)
C40.0628 (10)0.0564 (10)0.0736 (11)0.0085 (7)−0.0083 (8)0.0097 (7)
C50.0808 (11)0.0605 (10)0.0448 (9)0.0074 (7)0.0018 (7)0.0103 (6)
C60.0476 (7)0.0455 (8)0.0364 (7)−0.0053 (5)0.0133 (5)−0.0027 (5)
C70.0615 (9)0.0436 (9)0.0428 (8)0.0051 (6)0.0115 (6)−0.0030 (5)
C80.0597 (9)0.0496 (10)0.0600 (9)0.0057 (6)0.0167 (7)−0.0037 (6)
N1—C61.3361 (18)C3—H3A0.9700
N1—C11.4597 (16)C3—H3B0.9700
N1—C51.4650 (17)C4—C51.508 (3)
N2—C81.134 (2)C4—H4A0.9700
O1—C61.2271 (16)C4—H4B0.9700
C1—C21.508 (2)C5—H5A0.9700
C1—H1A0.9700C5—H5B0.9700
C1—H1B0.9700C6—C71.5224 (18)
C2—C31.514 (2)C7—C81.458 (2)
C2—H2A0.9700C7—H7A0.9700
C2—H2B0.9700C7—H7B0.9700
C3—C41.508 (2)
C6—N1—C1125.76 (11)C5—C4—H4A109.2
C6—N1—C5119.75 (11)C3—C4—H4A109.2
C1—N1—C5113.99 (12)C5—C4—H4B109.2
N1—C1—C2110.43 (11)C3—C4—H4B109.2
N1—C1—H1A109.6H4A—C4—H4B107.9
C2—C1—H1A109.6N1—C5—C4110.98 (13)
N1—C1—H1B109.6N1—C5—H5A109.4
C2—C1—H1B109.6C4—C5—H5A109.4
H1A—C1—H1B108.1N1—C5—H5B109.4
C1—C2—C3111.34 (14)C4—C5—H5B109.4
C1—C2—H2A109.4H5A—C5—H5B108.0
C3—C2—H2A109.4O1—C6—N1123.45 (12)
C1—C2—H2B109.4O1—C6—C7119.88 (12)
C3—C2—H2B109.4N1—C6—C7116.67 (11)
H2A—C2—H2B108.0C8—C7—C6111.28 (11)
C4—C3—C2110.49 (13)C8—C7—H7A109.4
C4—C3—H3A109.6C6—C7—H7A109.4
C2—C3—H3A109.6C8—C7—H7B109.4
C4—C3—H3B109.6C6—C7—H7B109.4
C2—C3—H3B109.6H7A—C7—H7B108.0
H3A—C3—H3B108.1N2—C8—C7177.51 (18)
C5—C4—C3111.85 (14)
C6—N1—C1—C2131.80 (14)C3—C4—C5—N1−53.1 (2)
C5—N1—C1—C2−56.33 (17)C1—N1—C6—O1175.87 (13)
N1—C1—C2—C355.29 (18)C5—N1—C6—O14.4 (2)
C1—C2—C3—C4−54.4 (2)C1—N1—C6—C7−4.54 (19)
C2—C3—C4—C553.3 (2)C5—N1—C6—C7−175.99 (12)
C6—N1—C5—C4−132.36 (14)O1—C6—C7—C86.13 (18)
C1—N1—C5—C455.23 (18)N1—C6—C7—C8−173.48 (11)
D—H···AD—HH···AD···AD—H···A
C7—H7A···O1i0.972.233.1922 (17)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C7—H7A⋯O1i 0.972.233.1922 (17)170

Symmetry code: (i) .

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