Literature DB >> 22091184

1-[(Z)-2-Phenyl-hydrazin-1-yl-idene]-1-(piperidin-1-yl)propan-2-one.

Hatem A Abdel-Aziz, Seik Weng Ng, Edward R T Tiekink.   

Abstract

A Z configuration about the imine bond [1.3025 (18) Å] in the title compound, C(14)H(19)N(3)O, allows for the formation of an intra-moleclar N-H⋯N hydrogen bond between the hydrazone H and piperidine N atoms; the carbonyl group is disposed to lie over the piperidine residue, which is in a chair form. A twist between the terminal benzene ring and the hydrazine residue is seen [N-N-C-C torsion angle = 163.81 (12)°]. Helical supra-molecular chains along the c axis mediated by N-H⋯O hydrogen bonds are the most prominent feature of the crystal packing. The chains are connected into layers lying in the ac plane by weak C-H⋯π contacts involving two methyl-ene H atoms and an adjacent benzene ring.

Entities:  

Year:  2011        PMID: 22091184      PMCID: PMC3213607          DOI: 10.1107/S1600536811029680

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of amidrazones, see: Frohberg et al. (2006 ▶); Abdel-Aziz & Mekawey (2009 ▶); Abdel-Aziz et al. (2010 ▶). For the synthesis, see: Frohberg et al. (1995 ▶).

Experimental

Crystal data

C14H19N3O M = 245.32 Orthorhombic, a = 9.1195 (2) Å b = 11.9614 (2) Å c = 12.0393 (2) Å V = 1313.27 (4) Å3 Z = 4 Cu Kα radiation μ = 0.64 mm−1 T = 100 K 0.25 × 0.10 × 0.05 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.857, T max = 0.969 5335 measured reflections 2589 independent reflections 2482 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.080 S = 1.05 2589 reflections 168 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.12 e Å−3 Δρmin = −0.20 e Å−3 Absolute structure: Flack (1983 ▶), 1077 Friedel pairs Flack parameter: −0.1 (3) Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811029680/hb6327sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811029680/hb6327Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811029680/hb6327Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H19N3OF(000) = 528
Mr = 245.32Dx = 1.241 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.5418 Å
Hall symbol: P 2ac 2abCell parameters from 3524 reflections
a = 9.1195 (2) Åθ = 3.7–73.9°
b = 11.9614 (2) ŵ = 0.64 mm1
c = 12.0393 (2) ÅT = 100 K
V = 1313.27 (4) Å3Prism, yellow
Z = 40.25 × 0.10 × 0.05 mm
Agilent SuperNova Dual diffractometer with an Atlas detector2589 independent reflections
Radiation source: SuperNova (Cu) X-ray Source2482 reflections with I > 2σ(I)
mirrorRint = 0.021
Detector resolution: 10.4041 pixels mm-1θmax = 74.1°, θmin = 5.2°
ω scansh = −11→7
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −14→11
Tmin = 0.857, Tmax = 0.969l = −15→13
5335 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.080w = 1/[σ2(Fo2) + (0.0415P)2 + 0.2381P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2589 reflectionsΔρmax = 0.12 e Å3
168 parametersΔρmin = −0.20 e Å3
0 restraintsAbsolute structure: Flack (1983), 1077 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.1 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.78315 (11)0.39621 (8)0.41136 (8)0.0206 (2)
N10.76810 (12)0.50948 (9)0.20177 (9)0.0152 (2)
N20.55012 (12)0.40406 (10)0.18282 (10)0.0161 (2)
N30.52865 (13)0.46113 (10)0.08925 (10)0.0176 (2)
C10.91802 (15)0.46592 (12)0.18446 (12)0.0180 (3)
H1A0.91390.39630.14010.022*
H1B0.96340.44820.25710.022*
C21.01007 (16)0.55293 (12)0.12398 (12)0.0212 (3)
H2A0.97130.56320.04790.025*
H2B1.11230.52580.11790.025*
C31.00881 (16)0.66502 (12)0.18456 (13)0.0221 (3)
H3A1.06140.65760.25610.027*
H3B1.06060.72160.13920.027*
C40.85187 (16)0.70368 (12)0.20604 (13)0.0219 (3)
H4A0.85310.77290.25100.026*
H4B0.80310.72050.13450.026*
C50.76669 (16)0.61340 (11)0.26713 (12)0.0201 (3)
H5A0.81160.59990.34080.024*
H5B0.66430.63820.27880.024*
C60.66729 (15)0.42747 (11)0.24015 (11)0.0159 (3)
C70.68611 (15)0.36763 (12)0.34649 (11)0.0172 (3)
C80.58735 (18)0.27024 (12)0.37224 (12)0.0236 (3)
H8A0.58970.25500.45220.035*
H8B0.62120.20410.33160.035*
H8C0.48680.28820.34970.035*
C90.40458 (15)0.43897 (11)0.02405 (11)0.0158 (3)
C100.36359 (15)0.51634 (12)−0.05636 (11)0.0177 (3)
H100.41950.5825−0.06680.021*
C110.24038 (16)0.49645 (13)−0.12146 (11)0.0215 (3)
H110.21260.5490−0.17680.026*
C120.15788 (17)0.40034 (14)−0.10604 (12)0.0246 (3)
H120.07310.3875−0.15000.030*
C130.19957 (17)0.32311 (13)−0.02621 (13)0.0249 (3)
H130.14340.2570−0.01600.030*
C140.32279 (16)0.34171 (12)0.03888 (12)0.0206 (3)
H140.35120.28840.09330.025*
H30.596 (2)0.5100 (15)0.0692 (16)0.029 (5)*
U11U22U33U12U13U23
O10.0199 (5)0.0240 (5)0.0178 (5)−0.0002 (4)−0.0022 (4)−0.0007 (4)
N10.0118 (5)0.0150 (5)0.0189 (5)−0.0006 (4)0.0002 (4)−0.0004 (4)
N20.0153 (5)0.0165 (5)0.0166 (5)0.0009 (5)0.0010 (4)−0.0002 (5)
N30.0141 (5)0.0204 (6)0.0184 (5)−0.0045 (5)−0.0016 (5)0.0037 (5)
C10.0147 (6)0.0190 (7)0.0203 (6)0.0023 (5)0.0022 (6)−0.0026 (6)
C20.0151 (6)0.0244 (7)0.0241 (7)−0.0003 (6)0.0043 (6)0.0018 (6)
C30.0162 (7)0.0221 (7)0.0280 (7)−0.0048 (6)0.0004 (6)0.0034 (6)
C40.0192 (7)0.0167 (6)0.0297 (7)−0.0018 (6)0.0014 (6)0.0011 (6)
C50.0179 (7)0.0167 (6)0.0255 (7)0.0009 (6)0.0043 (6)−0.0022 (6)
C60.0141 (6)0.0156 (6)0.0178 (6)−0.0004 (5)0.0020 (5)−0.0018 (5)
C70.0170 (7)0.0175 (7)0.0171 (6)0.0024 (5)0.0017 (5)−0.0029 (5)
C80.0299 (8)0.0211 (7)0.0199 (7)−0.0047 (6)−0.0008 (6)0.0031 (6)
C90.0117 (6)0.0187 (7)0.0171 (6)0.0002 (5)0.0004 (5)−0.0039 (5)
C100.0154 (6)0.0203 (6)0.0175 (6)0.0000 (5)0.0019 (5)−0.0023 (5)
C110.0177 (7)0.0286 (8)0.0181 (6)0.0044 (6)−0.0001 (5)−0.0019 (6)
C120.0156 (6)0.0342 (8)0.0241 (7)−0.0019 (6)−0.0052 (6)−0.0072 (6)
C130.0192 (7)0.0248 (7)0.0307 (8)−0.0061 (6)−0.0009 (6)−0.0047 (6)
C140.0180 (7)0.0191 (7)0.0247 (7)−0.0034 (6)−0.0014 (6)−0.0006 (6)
O1—C71.2288 (17)C4—H4B0.9900
N1—C61.4216 (17)C5—H5A0.9900
N1—C51.4712 (17)C5—H5B0.9900
N1—C11.4778 (17)C6—C71.4767 (19)
N2—C61.3025 (18)C7—C81.505 (2)
N2—N31.3317 (16)C8—H8A0.9800
N3—C91.4023 (17)C8—H8B0.9800
N3—H30.88 (2)C8—H8C0.9800
C1—C21.523 (2)C9—C101.391 (2)
C1—H1A0.9900C9—C141.3934 (19)
C1—H1B0.9900C10—C111.390 (2)
C2—C31.526 (2)C10—H100.9500
C2—H2A0.9900C11—C121.386 (2)
C2—H2B0.9900C11—H110.9500
C3—C41.526 (2)C12—C131.386 (2)
C3—H3A0.9900C12—H120.9500
C3—H3B0.9900C13—C141.388 (2)
C4—C51.5201 (19)C13—H130.9500
C4—H4A0.9900C14—H140.9500
C6—N1—C5113.80 (10)N1—C5—H5B109.7
C6—N1—C1113.63 (10)C4—C5—H5B109.7
C5—N1—C1112.42 (10)H5A—C5—H5B108.2
C6—N2—N3117.31 (11)N2—C6—N1120.44 (12)
N2—N3—C9119.69 (11)N2—C6—C7116.78 (12)
N2—N3—H3118.1 (13)N1—C6—C7122.75 (12)
C9—N3—H3122.1 (13)O1—C7—C6119.99 (13)
N1—C1—C2109.67 (11)O1—C7—C8121.03 (12)
N1—C1—H1A109.7C6—C7—C8118.96 (12)
C2—C1—H1A109.7C7—C8—H8A109.5
N1—C1—H1B109.7C7—C8—H8B109.5
C2—C1—H1B109.7H8A—C8—H8B109.5
H1A—C1—H1B108.2C7—C8—H8C109.5
C1—C2—C3111.58 (12)H8A—C8—H8C109.5
C1—C2—H2A109.3H8B—C8—H8C109.5
C3—C2—H2A109.3C10—C9—C14120.06 (13)
C1—C2—H2B109.3C10—C9—N3118.74 (12)
C3—C2—H2B109.3C14—C9—N3121.20 (13)
H2A—C2—H2B108.0C11—C10—C9119.72 (13)
C4—C3—C2110.75 (12)C11—C10—H10120.1
C4—C3—H3A109.5C9—C10—H10120.1
C2—C3—H3A109.5C10—C11—C12120.33 (14)
C4—C3—H3B109.5C10—C11—H11119.8
C2—C3—H3B109.5C12—C11—H11119.8
H3A—C3—H3B108.1C13—C12—C11119.78 (13)
C5—C4—C3110.24 (12)C13—C12—H12120.1
C5—C4—H4A109.6C11—C12—H12120.1
C3—C4—H4A109.6C12—C13—C14120.44 (14)
C5—C4—H4B109.6C12—C13—H13119.8
C3—C4—H4B109.6C14—C13—H13119.8
H4A—C4—H4B108.1C13—C14—C9119.66 (14)
N1—C5—C4109.69 (11)C13—C14—H14120.2
N1—C5—H5A109.7C9—C14—H14120.2
C4—C5—H5A109.7
C6—N2—N3—C9179.73 (12)N2—C6—C7—O1−170.31 (12)
C6—N1—C1—C2169.70 (11)N1—C6—C7—O17.84 (19)
C5—N1—C1—C2−59.23 (15)N2—C6—C7—C811.11 (18)
N1—C1—C2—C354.55 (15)N1—C6—C7—C8−170.74 (13)
C1—C2—C3—C4−53.17 (16)N2—N3—C9—C10163.81 (12)
C2—C3—C4—C554.34 (16)N2—N3—C9—C14−16.06 (19)
C6—N1—C5—C4−167.80 (11)C14—C9—C10—C110.3 (2)
C1—N1—C5—C461.21 (15)N3—C9—C10—C11−179.57 (12)
C3—C4—C5—N1−57.74 (16)C9—C10—C11—C120.4 (2)
N3—N2—C6—N1−1.12 (18)C10—C11—C12—C13−0.8 (2)
N3—N2—C6—C7177.07 (11)C11—C12—C13—C140.4 (2)
C5—N1—C6—N2108.74 (14)C12—C13—C14—C90.3 (2)
C1—N1—C6—N2−120.87 (13)C10—C9—C14—C13−0.7 (2)
C5—N1—C6—C7−69.34 (15)N3—C9—C14—C13179.22 (13)
C1—N1—C6—C761.04 (16)
Cg1 is the centroid of the C9–C14 benzene ring.
D—H···AD—HH···AD···AD—H···A
N3—H3···O1i0.88 (2)2.47 (2)3.2317 (15)145.6 (17)
N3—H3···N10.88 (2)2.242 (19)2.6340 (16)106.8 (15)
C2—H2b···Cg1ii0.992.773.5535 (16)137
C3—H3a···Cg1iii0.992.983.9473 (16)167
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C9–C14 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯O1i0.88 (2)2.47 (2)3.2317 (15)145.6 (17)
N3—H3⋯N10.88 (2)2.242 (19)2.6340 (16)106.8 (15)
C2—H2b⋯Cg1ii0.992.773.5535 (16)137
C3—H3a⋯Cg1iii0.992.983.9473 (16)167

Symmetry codes: (i) ; (ii) ; (iii) .

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