Literature DB >> 22969594

(Z)-2-Benzyl-idenebenzo[d]thia-zolo[3,2-a]imidazol-3(2H)-one.

Hoong-Kun Fun, Ching Kheng Quah, Hatem A Abdel-Aziz, Hazem A Ghabbour.   

Abstract

The mol-ecule of the title compound, C(16)H(10)N(2)OS, is approximately planar, the dihedral angle between the 1,3-benzothia-zolo[3,2-a]imidazol-3(2H)-one and the benzyl-idene moieties being 4.10 (8)°. A weak intra-molecular C-H⋯S inter-action generates an S(6) ring. No inter-molecular hydrogen bonds are observed in the crystal structure.

Entities:  

Year:  2012        PMID: 22969594      PMCID: PMC3435723          DOI: 10.1107/S1600536812035003

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to and the biological activity of thia­zolo[3,2-a]benzimidazoles, see: Al-Rashood & Abdel-Aziz (2010 ▶); Chimirri et al. (1988 ▶), For a related structure, references to our previous work in this area and references to further synthetic details, see: Fun et al. (2012 ▶).

Experimental

Crystal data

C16H10N2OS M = 278.32 Orthorhombic, a = 12.1721 (5) Å b = 7.7697 (3) Å c = 27.2200 (8) Å V = 2574.29 (16) Å3 Z = 8 Cu Kα radiation μ = 2.20 mm−1 T = 296 K 0.77 × 0.65 × 0.04 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.282, T max = 0.917 8750 measured reflections 2270 independent reflections 1912 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.127 S = 1.03 2270 reflections 181 parameters H-atom parameters constrained Δρmax = 0.45 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812035003/hb6910sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035003/hb6910Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812035003/hb6910Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H10N2OSF(000) = 1152
Mr = 278.32Dx = 1.436 Mg m3
Orthorhombic, PbcaCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ac 2abCell parameters from 1434 reflections
a = 12.1721 (5) Åθ = 3.3–69.8°
b = 7.7697 (3) ŵ = 2.20 mm1
c = 27.2200 (8) ÅT = 296 K
V = 2574.29 (16) Å3Plate, yellow
Z = 80.77 × 0.65 × 0.04 mm
Bruker SMART APEXII CCD diffractometer2270 independent reflections
Radiation source: fine-focus sealed tube1912 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.051
φ and ω scansθmax = 67.4°, θmin = 3.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −13→14
Tmin = 0.282, Tmax = 0.917k = −8→6
8750 measured reflectionsl = −32→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0558P)2 + 0.7634P] where P = (Fo2 + 2Fc2)/3
2270 reflections(Δ/σ)max = 0.001
181 parametersΔρmax = 0.45 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.78126 (4)0.01576 (8)0.554734 (19)0.0518 (2)
O11.04329 (12)−0.1399 (2)0.62205 (6)0.0608 (5)
N10.89265 (13)0.0307 (2)0.63592 (6)0.0441 (4)
N20.72939 (15)0.1641 (3)0.64488 (7)0.0556 (5)
C10.95869 (16)−0.0762 (3)0.60802 (7)0.0450 (5)
C20.90610 (16)−0.0989 (3)0.55886 (7)0.0440 (5)
C30.79414 (17)0.0814 (3)0.61580 (8)0.0470 (5)
C40.78928 (17)0.1704 (3)0.68946 (8)0.0488 (5)
C50.75984 (19)0.2391 (3)0.73449 (9)0.0580 (6)
H5A0.69240.29310.73890.070*
C60.8340 (2)0.2249 (3)0.77273 (8)0.0591 (6)
H6A0.81560.27000.80330.071*
C70.9350 (2)0.1456 (3)0.76682 (8)0.0569 (6)
H7A0.98260.13870.79350.068*
C80.96661 (18)0.0763 (3)0.72232 (8)0.0506 (5)
H8A1.03490.02480.71800.061*
C90.89105 (17)0.0880 (3)0.68454 (7)0.0439 (5)
C100.95483 (17)−0.1957 (3)0.52492 (8)0.0472 (5)
H10A1.0213−0.24300.53500.057*
C110.92361 (16)−0.2417 (3)0.47492 (8)0.0460 (5)
C120.82753 (19)−0.1866 (4)0.45178 (9)0.0592 (6)
H12A0.7789−0.11470.46830.071*
C130.8045 (2)−0.2387 (4)0.40425 (10)0.0714 (7)
H13A0.7401−0.20210.38920.086*
C140.8757 (2)−0.3439 (4)0.37915 (9)0.0659 (7)
H14A0.8594−0.37840.34720.079*
C150.9707 (2)−0.3979 (4)0.40123 (9)0.0655 (7)
H15A1.0197−0.46770.38420.079*
C160.99336 (19)−0.3485 (3)0.44864 (8)0.0554 (6)
H16A1.0574−0.38790.46350.066*
U11U22U33U12U13U23
S10.0486 (4)0.0588 (4)0.0480 (3)0.0084 (2)−0.0101 (2)−0.0030 (2)
O10.0484 (8)0.0820 (12)0.0522 (9)0.0157 (8)−0.0082 (7)−0.0057 (8)
N10.0437 (9)0.0443 (10)0.0442 (9)0.0009 (7)−0.0052 (7)−0.0007 (7)
N20.0549 (10)0.0609 (13)0.0509 (10)0.0135 (9)−0.0049 (8)−0.0033 (9)
C10.0437 (11)0.0476 (12)0.0438 (11)−0.0019 (9)−0.0018 (9)0.0002 (9)
C20.0416 (10)0.0465 (13)0.0438 (11)−0.0023 (9)−0.0034 (8)0.0035 (9)
C30.0484 (11)0.0451 (12)0.0474 (11)0.0040 (9)−0.0060 (9)0.0031 (9)
C40.0530 (12)0.0463 (13)0.0471 (11)0.0022 (9)−0.0013 (9)0.0029 (9)
C50.0586 (13)0.0613 (15)0.0542 (13)0.0076 (11)0.0057 (11)−0.0022 (11)
C60.0708 (14)0.0632 (16)0.0432 (12)−0.0013 (12)0.0060 (10)−0.0032 (11)
C70.0656 (14)0.0616 (15)0.0437 (12)−0.0062 (11)−0.0053 (10)−0.0001 (11)
C80.0499 (11)0.0527 (14)0.0492 (11)−0.0013 (10)−0.0059 (9)0.0003 (10)
C90.0497 (11)0.0409 (12)0.0413 (10)−0.0030 (9)0.0006 (8)0.0001 (9)
C100.0449 (10)0.0520 (13)0.0446 (11)0.0002 (9)−0.0022 (9)0.0036 (10)
C110.0473 (10)0.0461 (12)0.0446 (11)−0.0049 (9)−0.0009 (9)0.0016 (9)
C120.0542 (12)0.0716 (17)0.0519 (12)0.0081 (11)−0.0052 (10)−0.0082 (12)
C130.0661 (15)0.090 (2)0.0578 (15)0.0089 (14)−0.0158 (12)−0.0099 (14)
C140.0783 (16)0.0715 (18)0.0478 (12)−0.0034 (13)−0.0079 (12)−0.0104 (12)
C150.0772 (16)0.0656 (17)0.0538 (13)0.0069 (13)0.0063 (12)−0.0083 (12)
C160.0544 (13)0.0606 (15)0.0511 (13)0.0049 (11)−0.0014 (10)0.0002 (11)
S1—C31.746 (2)C7—H7A0.9300
S1—C21.765 (2)C8—C91.383 (3)
O1—C11.205 (2)C8—H8A0.9300
N1—C31.376 (3)C10—C111.457 (3)
N1—C11.383 (3)C10—H10A0.9300
N1—C91.396 (3)C11—C161.386 (3)
N2—C31.289 (3)C11—C121.396 (3)
N2—C41.417 (3)C12—C131.384 (3)
C1—C21.494 (3)C12—H12A0.9300
C2—C101.331 (3)C13—C141.373 (4)
C4—C51.384 (3)C13—H13A0.9300
C4—C91.401 (3)C14—C151.369 (4)
C5—C61.382 (3)C14—H14A0.9300
C5—H5A0.9300C15—C161.374 (3)
C6—C71.384 (3)C15—H15A0.9300
C6—H6A0.9300C16—H16A0.9300
C7—C81.380 (3)
C3—S1—C290.54 (10)C7—C8—H8A121.9
C3—N1—C1117.37 (17)C9—C8—H8A121.9
C3—N1—C9105.91 (17)C8—C9—N1132.4 (2)
C1—N1—C9136.04 (18)C8—C9—C4123.2 (2)
C3—N2—C4103.21 (17)N1—C9—C4104.39 (17)
O1—C1—N1124.72 (19)C2—C10—C11132.1 (2)
O1—C1—C2127.0 (2)C2—C10—H10A113.9
N1—C1—C2108.28 (17)C11—C10—H10A113.9
C10—C2—C1119.84 (19)C16—C11—C12117.6 (2)
C10—C2—S1128.66 (16)C16—C11—C10117.96 (19)
C1—C2—S1111.49 (15)C12—C11—C10124.4 (2)
N2—C3—N1115.54 (19)C13—C12—C11120.1 (2)
N2—C3—S1132.50 (16)C13—C12—H12A119.9
N1—C3—S1111.95 (15)C11—C12—H12A119.9
C5—C4—C9119.3 (2)C14—C13—C12120.7 (2)
C5—C4—N2129.7 (2)C14—C13—H13A119.6
C9—C4—N2110.95 (18)C12—C13—H13A119.6
C6—C5—C4117.8 (2)C15—C14—C13119.8 (2)
C6—C5—H5A121.1C15—C14—H14A120.1
C4—C5—H5A121.1C13—C14—H14A120.1
C5—C6—C7121.9 (2)C14—C15—C16119.8 (2)
C5—C6—H6A119.1C14—C15—H15A120.1
C7—C6—H6A119.1C16—C15—H15A120.1
C8—C7—C6121.6 (2)C15—C16—C11121.9 (2)
C8—C7—H7A119.2C15—C16—H16A119.0
C6—C7—H7A119.2C11—C16—H16A119.0
C7—C8—C9116.2 (2)
C3—N1—C1—O1−174.8 (2)C6—C7—C8—C9−1.2 (4)
C9—N1—C1—O1−5.8 (4)C7—C8—C9—N1−178.4 (2)
C3—N1—C1—C24.5 (3)C7—C8—C9—C42.4 (3)
C9—N1—C1—C2173.5 (2)C3—N1—C9—C8−179.5 (2)
O1—C1—C2—C10−1.4 (4)C1—N1—C9—C810.7 (4)
N1—C1—C2—C10179.30 (19)C3—N1—C9—C4−0.1 (2)
O1—C1—C2—S1179.0 (2)C1—N1—C9—C4−169.9 (2)
N1—C1—C2—S1−0.3 (2)C5—C4—C9—C8−2.3 (3)
C3—S1—C2—C10177.7 (2)N2—C4—C9—C8179.4 (2)
C3—S1—C2—C1−2.71 (16)C5—C4—C9—N1178.3 (2)
C4—N2—C3—N1−0.2 (3)N2—C4—C9—N10.0 (2)
C4—N2—C3—S1178.6 (2)C1—C2—C10—C11179.5 (2)
C1—N1—C3—N2172.3 (2)S1—C2—C10—C11−1.0 (4)
C9—N1—C3—N20.2 (3)C2—C10—C11—C16−179.5 (2)
C1—N1—C3—S1−6.8 (3)C2—C10—C11—C12−0.1 (4)
C9—N1—C3—S1−178.84 (14)C16—C11—C12—C130.1 (4)
C2—S1—C3—N2−173.7 (3)C10—C11—C12—C13−179.3 (2)
C2—S1—C3—N15.20 (17)C11—C12—C13—C14−0.4 (5)
C3—N2—C4—C5−178.0 (3)C12—C13—C14—C15−0.1 (5)
C3—N2—C4—C90.1 (3)C13—C14—C15—C161.0 (4)
C9—C4—C5—C60.9 (4)C14—C15—C16—C11−1.3 (4)
N2—C4—C5—C6178.8 (2)C12—C11—C16—C150.8 (4)
C4—C5—C6—C70.2 (4)C10—C11—C16—C15−179.7 (2)
C5—C6—C7—C80.0 (4)
D—H···AD—HH···AD···AD—H···A
C12—H12A···S10.932.563.262 (3)132
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C12—H12A⋯S10.932.563.262 (3)132
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (Z)-2-(4-Chloro-benzyl-idene)benzo[d]thia-zolo[3,2-a]imidazol-3(2H)-one.

Authors:  Hoong-Kun Fun; Suchada Chantrapromma; Hatem A Abdel-Aziz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-18

Review 3.  Thiazolo[3,2-a]benzimidazoles: synthetic strategies, chemical transformations and biological activities.

Authors:  Khalid A Al-Rashood; Hatem A Abdel-Aziz
Journal:  Molecules       Date:  2010-05-26       Impact factor: 4.411

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.