Literature DB >> 22590282

(Z)-2-(4-Chloro-benzyl-idene)benzo[d]thia-zolo[3,2-a]imidazol-3(2H)-one.

Hoong-Kun Fun, Suchada Chantrapromma, Hatem A Abdel-Aziz.   

Abstract

The mol-ecule of the title compound, C(16)H(9)ClN(2)OS, is approximately planar, the dihedral angle between the thia-zolo[3,2-a]benzimidazole ring system and the 4-chloro-phenyl ring being 2.10 (5)°. An intra-molecular C-H⋯S inter-action generates an S(6) ring motif. In the crystal, mol-ecules are stacked into columns along the b axis by π-π inter-actions with centroid-centroid distances of 3.6495 (7)-3.9546 (8) Å.

Entities:  

Year:  2012        PMID: 22590282      PMCID: PMC3344520          DOI: 10.1107/S1600536812015516

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For background to and the biological activity of thia­zolo[3,2-a]benzimidazoles, see: Abdel-Aziz, El-Zahabi & Dawood (2010 ▶); Abdel-Aziz, Hamdy et al. (2007 ▶, 2008 ▶); Abdel-Aziz, Saleh & El-Zahabi (2010 ▶); Al-Rashood & Abdel-Aziz (2010 ▶); Chimirri et al. (1988 ▶); Farag et al. (2011 ▶); Hamdy et al. (2007 ▶); Mavrova et al. (2005 ▶). For the stability of the temperature controller, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C16H9ClN2OS M = 312.77 Triclinic, a = 7.0182 (4) Å b = 7.3443 (4) Å c = 13.7142 (8) Å α = 91.742 (1)° β = 100.836 (1)° γ = 112.878 (1)° V = 635.47 (6) Å3 Z = 2 Mo Kα radiation μ = 0.46 mm−1 T = 100 K 0.37 × 0.18 × 0.06 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.848, T max = 0.973 14145 measured reflections 3660 independent reflections 3233 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.082 S = 1.05 3660 reflections 190 parameters H-atom parameters constrained Δρmax = 0.56 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812015516/is5117sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812015516/is5117Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812015516/is5117Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H9ClN2OSZ = 2
Mr = 312.77F(000) = 320
Triclinic, P1Dx = 1.635 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.0182 (4) ÅCell parameters from 3660 reflections
b = 7.3443 (4) Åθ = 1.5–30.0°
c = 13.7142 (8) ŵ = 0.46 mm1
α = 91.742 (1)°T = 100 K
β = 100.836 (1)°Needle, yellow
γ = 112.878 (1)°0.37 × 0.18 × 0.06 mm
V = 635.47 (6) Å3
Bruker APEX DUO CCD area-detector diffractometer3660 independent reflections
Radiation source: sealed tube3233 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
φ and ω scansθmax = 30.0°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→9
Tmin = 0.848, Tmax = 0.973k = −10→10
14145 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0366P)2 + 0.3855P] where P = (Fo2 + 2Fc2)/3
3660 reflections(Δ/σ)max = 0.001
190 parametersΔρmax = 0.56 e Å3
0 restraintsΔρmin = −0.27 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.34693 (4)0.25459 (4)0.03735 (2)0.01299 (8)
Cl1−0.35675 (5)−0.18707 (5)−0.43869 (2)0.02057 (9)
O10.88271 (14)0.27130 (14)−0.01062 (7)0.01625 (18)
N10.58054 (16)0.43157 (15)0.22785 (8)0.0138 (2)
N20.75134 (15)0.36857 (15)0.11464 (7)0.01179 (19)
C10.56374 (18)0.36129 (17)0.13730 (9)0.0123 (2)
C20.79803 (18)0.49233 (17)0.27094 (9)0.0125 (2)
C30.90598 (19)0.57701 (18)0.36781 (9)0.0147 (2)
H3A0.83650.60300.41440.018*
C41.1227 (2)0.62158 (18)0.39238 (9)0.0156 (2)
H4A1.19880.67880.45660.019*
C51.22857 (19)0.58244 (18)0.32293 (9)0.0149 (2)
H5A1.37310.61380.34220.018*
C61.12230 (18)0.49741 (18)0.22550 (9)0.0135 (2)
H6A1.19180.47130.17890.016*
C70.90738 (18)0.45404 (17)0.20197 (9)0.0117 (2)
C80.73740 (18)0.28632 (17)0.01951 (9)0.0121 (2)
C90.51258 (18)0.21858 (17)−0.03702 (9)0.0120 (2)
C100.45896 (18)0.14096 (17)−0.13349 (9)0.0129 (2)
H10A0.57080.1362−0.15910.015*
C110.25559 (18)0.06330 (17)−0.20435 (9)0.0125 (2)
C120.25076 (19)−0.00568 (18)−0.30184 (9)0.0140 (2)
H12A0.37570.0004−0.31810.017*
C130.0643 (2)−0.08267 (18)−0.37443 (9)0.0154 (2)
H13A0.0636−0.1272−0.43880.018*
C14−0.12171 (19)−0.09177 (18)−0.34886 (9)0.0144 (2)
C15−0.12333 (19)−0.02595 (18)−0.25342 (9)0.0149 (2)
H15A−0.2493−0.0337−0.23770.018*
C160.06430 (19)0.05172 (18)−0.18134 (9)0.0141 (2)
H16A0.06350.0965−0.11730.017*
U11U22U33U12U13U23
S10.01026 (13)0.01520 (14)0.01318 (14)0.00536 (10)0.00154 (10)−0.00024 (10)
Cl10.01474 (14)0.02600 (17)0.01591 (15)0.00557 (12)−0.00226 (11)−0.00026 (11)
O10.0137 (4)0.0197 (4)0.0166 (4)0.0080 (3)0.0038 (3)−0.0002 (3)
N10.0123 (4)0.0143 (5)0.0146 (5)0.0056 (4)0.0021 (4)0.0006 (4)
N20.0103 (4)0.0130 (4)0.0123 (4)0.0052 (3)0.0018 (3)0.0012 (4)
C10.0108 (5)0.0127 (5)0.0145 (5)0.0056 (4)0.0029 (4)0.0021 (4)
C20.0126 (5)0.0113 (5)0.0140 (5)0.0056 (4)0.0024 (4)0.0015 (4)
C30.0163 (5)0.0142 (5)0.0136 (5)0.0065 (4)0.0029 (4)0.0007 (4)
C40.0176 (5)0.0135 (5)0.0134 (5)0.0057 (4)−0.0007 (4)0.0004 (4)
C50.0129 (5)0.0139 (5)0.0163 (6)0.0050 (4)0.0001 (4)0.0021 (4)
C60.0124 (5)0.0131 (5)0.0153 (5)0.0056 (4)0.0028 (4)0.0021 (4)
C70.0131 (5)0.0108 (5)0.0108 (5)0.0050 (4)0.0013 (4)0.0013 (4)
C80.0125 (5)0.0104 (5)0.0126 (5)0.0044 (4)0.0016 (4)0.0013 (4)
C90.0096 (5)0.0112 (5)0.0155 (5)0.0047 (4)0.0023 (4)0.0023 (4)
C100.0125 (5)0.0121 (5)0.0149 (5)0.0059 (4)0.0029 (4)0.0024 (4)
C110.0130 (5)0.0106 (5)0.0135 (5)0.0047 (4)0.0017 (4)0.0017 (4)
C120.0141 (5)0.0141 (5)0.0143 (5)0.0062 (4)0.0030 (4)0.0013 (4)
C130.0176 (5)0.0152 (5)0.0125 (5)0.0064 (4)0.0020 (4)0.0008 (4)
C140.0136 (5)0.0125 (5)0.0142 (5)0.0042 (4)−0.0009 (4)0.0016 (4)
C150.0129 (5)0.0158 (5)0.0161 (6)0.0059 (4)0.0033 (4)0.0027 (4)
C160.0148 (5)0.0144 (5)0.0131 (5)0.0061 (4)0.0028 (4)0.0010 (4)
S1—C11.7411 (12)C6—C71.3849 (16)
S1—C91.7692 (12)C6—H6A0.9300
Cl1—C141.7363 (12)C8—C91.4981 (16)
O1—C81.2108 (14)C9—C101.3480 (16)
N1—C11.2967 (15)C10—C111.4556 (16)
N1—C21.4119 (15)C10—H10A0.9300
N2—C11.3903 (14)C11—C121.4049 (16)
N2—C81.3909 (15)C11—C161.4076 (16)
N2—C71.3980 (15)C12—C131.3871 (17)
C2—C31.3895 (16)C12—H12A0.9300
C2—C71.4097 (16)C13—C141.3917 (17)
C3—C41.3955 (17)C13—H13A0.9300
C3—H3A0.9300C14—C151.3850 (17)
C4—C51.3990 (17)C15—C161.3888 (17)
C4—H4A0.9300C15—H15A0.9300
C5—C61.3942 (17)C16—H16A0.9300
C5—H5A0.9300
C1—S1—C990.12 (5)O1—C8—C9126.82 (11)
C1—N1—C2103.32 (10)N2—C8—C9107.93 (10)
C1—N2—C8116.71 (10)C10—C9—C8119.68 (10)
C1—N2—C7105.85 (9)C10—C9—S1128.06 (9)
C8—N2—C7137.35 (10)C8—C9—S1112.26 (8)
N1—C1—N2115.19 (10)C9—C10—C11130.90 (11)
N1—C1—S1131.92 (9)C9—C10—H10A114.5
N2—C1—S1112.88 (9)C11—C10—H10A114.5
C3—C2—C7120.04 (11)C12—C11—C16118.15 (11)
C3—C2—N1128.60 (11)C12—C11—C10117.52 (10)
C7—C2—N1111.36 (10)C16—C11—C10124.33 (11)
C2—C3—C4117.38 (11)C13—C12—C11121.66 (11)
C2—C3—H3A121.3C13—C12—H12A119.2
C4—C3—H3A121.3C11—C12—H12A119.2
C3—C4—C5121.78 (11)C12—C13—C14118.53 (11)
C3—C4—H4A119.1C12—C13—H13A120.7
C5—C4—H4A119.1C14—C13—H13A120.7
C6—C5—C4121.47 (11)C15—C14—C13121.46 (11)
C6—C5—H5A119.3C15—C14—Cl1119.27 (9)
C4—C5—H5A119.3C13—C14—Cl1119.26 (9)
C7—C6—C5116.23 (11)C14—C15—C16119.61 (11)
C7—C6—H6A121.9C14—C15—H15A120.2
C5—C6—H6A121.9C16—C15—H15A120.2
C6—C7—N2132.61 (11)C15—C16—C11120.58 (11)
C6—C7—C2123.10 (11)C15—C16—H16A119.7
N2—C7—C2104.28 (10)C11—C16—H16A119.7
O1—C8—N2125.24 (11)
C2—N1—C1—N20.05 (14)C1—N2—C8—O1−176.11 (12)
C2—N1—C1—S1179.02 (10)C7—N2—C8—O1−0.2 (2)
C8—N2—C1—N1177.22 (10)C1—N2—C8—C93.12 (14)
C7—N2—C1—N10.13 (14)C7—N2—C8—C9178.99 (13)
C8—N2—C1—S1−1.95 (13)O1—C8—C9—C10−3.77 (19)
C7—N2—C1—S1−179.04 (8)N2—C8—C9—C10177.02 (11)
C9—S1—C1—N1−178.97 (13)O1—C8—C9—S1176.23 (11)
C9—S1—C1—N20.01 (9)N2—C8—C9—S1−2.99 (12)
C1—N1—C2—C3−179.20 (12)C1—S1—C9—C10−178.28 (12)
C1—N1—C2—C7−0.20 (13)C1—S1—C9—C81.72 (9)
C7—C2—C3—C40.23 (18)C8—C9—C10—C11179.37 (11)
N1—C2—C3—C4179.15 (12)S1—C9—C10—C11−0.6 (2)
C2—C3—C4—C5−0.26 (18)C9—C10—C11—C12178.99 (12)
C3—C4—C5—C60.22 (19)C9—C10—C11—C16−1.5 (2)
C4—C5—C6—C7−0.14 (18)C16—C11—C12—C130.28 (18)
C5—C6—C7—N2−179.28 (12)C10—C11—C12—C13179.85 (11)
C5—C6—C7—C20.12 (18)C11—C12—C13—C14−0.30 (19)
C1—N2—C7—C6179.25 (13)C12—C13—C14—C150.04 (19)
C8—N2—C7—C63.1 (2)C12—C13—C14—Cl1179.84 (9)
C1—N2—C7—C2−0.24 (12)C13—C14—C15—C160.24 (19)
C8—N2—C7—C2−176.40 (13)Cl1—C14—C15—C16−179.57 (9)
C3—C2—C7—C6−0.17 (18)C14—C15—C16—C11−0.26 (19)
N1—C2—C7—C6−179.26 (11)C12—C11—C16—C150.01 (18)
C3—C2—C7—N2179.38 (11)C10—C11—C16—C15−179.53 (11)
N1—C2—C7—N20.28 (13)
D—H···AD—HH···AD···AD—H···A
C16—H16A···S10.932.503.2161 (13)133
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C16—H16A⋯S10.932.503.2161 (13)133
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Microwave-assisted synthesis and in-vitro anti-tumor activity of 1,3,4-triaryl-5-N-arylpyrazole-carboxamides.

Authors:  Hatem A Abdel-Aziz; Heba S A El-Zahabi; Kamal M Dawood
Journal:  Eur J Med Chem       Date:  2010-02-16       Impact factor: 6.514

3.  Facile synthesis and in-vitro antitumor activity of some pyrazolo[3,4-b]pyridines and pyrazolo[1,5-a]pyrimidines linked to a thiazolo[3,2-a]benzimidazole moiety.

Authors:  Hatem A Abdel-Aziz; Tamer S Saleh; Heba S A El-Zahabi
Journal:  Arch Pharm (Weinheim)       Date:  2010-01       Impact factor: 3.751

Review 4.  Thiazolo[3,2-a]benzimidazoles: synthetic strategies, chemical transformations and biological activities.

Authors:  Khalid A Al-Rashood; Hatem A Abdel-Aziz
Journal:  Molecules       Date:  2010-05-26       Impact factor: 4.411

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  (Z)-2-Benzyl-idenebenzo[d]thia-zolo[3,2-a]imidazol-3(2H)-one.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Hatem A Abdel-Aziz; Hazem A Ghabbour
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-15
  1 in total

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