Literature DB >> 22969567

(Z)-3-Meth-oxy-N-[(5-nitro-thio-phen-2-yl)methyl-idene]aniline.

Tufan Akbal, Erbil Ağar, Ahmet Erdönmez.   

Abstract

In the title compound, C(12)H(10)N(2)O(3)S, the dihedral angle between the benzene and thio-phene rings is 43.17 (4)°. The crystal structure is devoid of any hydrogen-bonding inter-actions. However, π-π inter-actions between the benzene and thio-phene rings [distance between ring centroids = 3.6850 (11) Å] stack the mol-ecules along the a axis. The absolute structure could not be determined as the crystal studied was a racemic twin with a BASF parameter of 0.31 (6).

Entities:  

Year:  2012        PMID: 22969567      PMCID: PMC3435696          DOI: 10.1107/S1600536812033120

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological and industrial properties of Schiff bases, see: Barton & Ollis (1979 ▶); Taggi et al. (2002 ▶). For a related structure, see: Ceylan et al. (2011 ▶).

Experimental

Crystal data

C12H10N2O3S M = 262.29 Orthorhombic, a = 7.4612 (3) Å b = 10.8737 (5) Å c = 14.8465 (9) Å V = 1204.51 (10) Å3 Z = 4 Mo Kα radiation μ = 0.27 mm−1 T = 296 K 0.69 × 0.51 × 0.28 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED; Stoe & Cie, 2002 ▶) T min = 0.873, T max = 0.938 5538 measured reflections 2375 independent reflections 2200 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.076 S = 1.02 2375 reflections 165 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack (1983 ▶), 986 Friedel pairs Flack parameter: 0.31 (6) Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812033120/pv2561sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812033120/pv2561Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812033120/pv2561Isup4.mol Supplementary material file. DOI: 10.1107/S1600536812033120/pv2561Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10N2O3SF(000) = 544
Mr = 262.29Dx = 1.446 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 5538 reflections
a = 7.4612 (3) Åθ = 2.3–26°
b = 10.8737 (5) ŵ = 0.27 mm1
c = 14.8465 (9) ÅT = 296 K
V = 1204.51 (10) Å3Prism, yellow
Z = 40.69 × 0.51 × 0.28 mm
Stoe IPDS 2 diffractometer2375 independent reflections
Radiation source: fine-focus sealed tube2200 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
w–scan rotationθmax = 26.0°, θmin = 2.3°
Absorption correction: integration (X-RED; Stoe & Cie, 2002)h = −8→9
Tmin = 0.873, Tmax = 0.938k = −13→13
5538 measured reflectionsl = −15→18
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.030w = 1/[σ2(Fo2) + (0.0517P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.076(Δ/σ)max = 0.001
S = 1.02Δρmax = 0.17 e Å3
2375 reflectionsΔρmin = −0.18 e Å3
165 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0097 (18)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983),986 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.31 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.17537 (6)0.72680 (4)0.17461 (3)0.04740 (13)
O30.2561 (2)0.78260 (13)−0.33068 (9)0.0645 (3)
N10.1374 (2)0.81303 (13)−0.01636 (9)0.0475 (3)
N20.1792 (2)0.60779 (17)0.33474 (11)0.0665 (4)
O10.2270 (3)0.70702 (19)0.36455 (10)0.0961 (6)
C10.1284 (2)0.86180 (14)−0.10418 (11)0.0440 (4)
C30.1854 (2)0.85202 (15)−0.26249 (11)0.0479 (4)
C70.1414 (2)0.60021 (16)0.24090 (12)0.0490 (4)
C100.1066 (2)0.64354 (15)0.08297 (11)0.0449 (4)
C40.1172 (3)0.96946 (18)−0.27339 (13)0.0585 (5)
H40.11311.0056−0.33010.070*
C60.0617 (3)0.98144 (16)−0.11459 (13)0.0539 (4)
H60.02241.0258−0.06480.065*
O20.1619 (3)0.51571 (17)0.38055 (10)0.0973 (6)
C80.0809 (3)0.50020 (17)0.19685 (13)0.0560 (5)
H80.05550.42500.22380.067*
C50.0552 (3)1.03209 (18)−0.19860 (14)0.0619 (5)
H50.00791.1106−0.20570.074*
C20.1906 (2)0.79816 (13)−0.17871 (11)0.0442 (3)
H20.23600.7190−0.17210.053*
C110.0970 (2)0.70084 (16)−0.00462 (11)0.0471 (4)
H110.06020.6542−0.05380.057*
C90.0616 (3)0.52531 (17)0.10520 (13)0.0546 (4)
H90.02220.46760.06340.065*
C120.2302 (4)0.8228 (3)−0.42063 (14)0.0905 (8)
H12A0.28640.7659−0.46120.136*
H12B0.28240.9028−0.42810.136*
H12C0.10420.8268−0.43340.136*
U11U22U33U12U13U23
S10.0552 (2)0.0474 (2)0.03953 (19)−0.00386 (17)0.00184 (18)−0.00330 (17)
O30.0855 (9)0.0682 (8)0.0397 (6)0.0033 (7)0.0063 (6)0.0038 (6)
N10.0494 (7)0.0529 (7)0.0401 (7)−0.0007 (6)−0.0015 (6)−0.0038 (6)
N20.0752 (11)0.0795 (10)0.0447 (8)0.0042 (9)0.0000 (9)0.0045 (8)
O10.1360 (17)0.1054 (13)0.0468 (8)−0.0233 (12)−0.0092 (9)−0.0107 (9)
C10.0418 (8)0.0459 (8)0.0444 (9)−0.0028 (7)−0.0040 (7)−0.0006 (7)
C30.0481 (9)0.0512 (8)0.0443 (8)−0.0065 (8)−0.0015 (8)0.0033 (7)
C70.0494 (9)0.0555 (9)0.0421 (8)0.0057 (8)0.0031 (7)0.0042 (7)
C100.0449 (9)0.0496 (8)0.0403 (8)0.0003 (7)0.0005 (7)−0.0045 (7)
C40.0659 (11)0.0538 (9)0.0558 (10)−0.0045 (9)−0.0125 (9)0.0135 (9)
C60.0565 (10)0.0463 (9)0.0590 (11)0.0008 (8)−0.0086 (9)−0.0075 (8)
O20.1395 (16)0.0977 (11)0.0546 (9)0.0113 (13)0.0039 (10)0.0283 (9)
C80.0616 (11)0.0467 (9)0.0598 (11)0.0012 (7)0.0033 (9)0.0068 (8)
C50.0670 (11)0.0445 (9)0.0742 (13)0.0061 (8)−0.0134 (10)0.0034 (9)
C20.0451 (8)0.0418 (7)0.0456 (8)−0.0014 (6)−0.0029 (7)0.0026 (7)
C110.0485 (9)0.0546 (9)0.0382 (8)−0.0010 (7)−0.0002 (7)−0.0056 (7)
C90.0621 (10)0.0482 (9)0.0534 (10)0.0002 (8)−0.0032 (9)−0.0078 (8)
C120.118 (2)0.1166 (19)0.0373 (10)0.0071 (17)0.0024 (12)0.0116 (12)
S1—C71.7110 (18)C10—C111.444 (2)
S1—C101.7128 (17)C4—C51.382 (3)
O3—C31.369 (2)C4—H40.9300
O3—C121.418 (3)C6—C51.364 (3)
N1—C111.269 (2)C6—H60.9300
N1—C11.409 (2)C8—C91.395 (3)
N2—O21.217 (2)C8—H80.9300
N2—O11.220 (2)C5—H50.9300
N2—C71.424 (2)C2—H20.9300
C1—C21.385 (2)C11—H110.9300
C1—C61.401 (2)C9—H90.9300
C3—C21.375 (2)C12—H12A0.9600
C3—C41.384 (3)C12—H12B0.9600
C7—C81.347 (3)C12—H12C0.9600
C10—C91.369 (3)
C7—S1—C1089.27 (8)C1—C6—H6120.4
C3—O3—C12118.30 (17)C7—C8—C9110.49 (17)
C11—N1—C1118.54 (14)C7—C8—H8124.8
O2—N2—O1123.77 (18)C9—C8—H8124.8
O2—N2—C7118.57 (18)C6—C5—C4121.58 (17)
O1—N2—C7117.66 (17)C6—C5—H5119.2
C2—C1—C6119.65 (16)C4—C5—H5119.2
C2—C1—N1122.36 (14)C3—C2—C1120.01 (14)
C6—C1—N1117.92 (15)C3—C2—H2120.0
O3—C3—C2115.04 (15)C1—C2—H2120.0
O3—C3—C4124.34 (16)N1—C11—C10121.81 (15)
C2—C3—C4120.60 (16)N1—C11—H11119.1
C8—C7—N2126.02 (17)C10—C11—H11119.1
C8—C7—S1114.83 (13)C10—C9—C8113.18 (17)
N2—C7—S1119.15 (14)C10—C9—H9123.4
C9—C10—C11127.61 (16)C8—C9—H9123.4
C9—C10—S1112.23 (14)O3—C12—H12A109.5
C11—C10—S1120.14 (12)O3—C12—H12B109.5
C5—C4—C3118.92 (17)H12A—C12—H12B109.5
C5—C4—H4120.5O3—C12—H12C109.5
C3—C4—H4120.5H12A—C12—H12C109.5
C5—C6—C1119.22 (18)H12B—C12—H12C109.5
C5—C6—H6120.4
C11—N1—C1—C2−42.6 (2)N1—C1—C6—C5178.55 (16)
C11—N1—C1—C6140.62 (16)N2—C7—C8—C9−179.03 (19)
C12—O3—C3—C2170.13 (19)S1—C7—C8—C90.5 (2)
C12—O3—C3—C4−11.7 (3)C1—C6—C5—C4−1.7 (3)
O2—N2—C7—C82.6 (3)C3—C4—C5—C60.8 (3)
O1—N2—C7—C8−177.3 (2)O3—C3—C2—C1177.79 (15)
O2—N2—C7—S1−176.88 (17)C4—C3—C2—C1−0.4 (3)
O1—N2—C7—S13.2 (3)C6—C1—C2—C3−0.6 (2)
C10—S1—C7—C8−0.21 (15)N1—C1—C2—C3−177.34 (15)
C10—S1—C7—N2179.32 (16)C1—N1—C11—C10178.65 (15)
C7—S1—C10—C9−0.11 (15)C9—C10—C11—N1177.72 (17)
C7—S1—C10—C11178.33 (15)S1—C10—C11—N1−0.5 (2)
O3—C3—C4—C5−177.69 (18)C11—C10—C9—C8−177.90 (17)
C2—C3—C4—C50.3 (3)S1—C10—C9—C80.4 (2)
C2—C1—C6—C51.6 (3)C7—C8—C9—C10−0.5 (2)
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