Literature DB >> 22969532

[1-Meth-oxy-3-(pyridin-2-yl)indolizin-2-yl](pyridin-2-yl)methanone.

Tobias Kloubert1, Robert Kretschmer, Helmar Görls, Matthias Westerhausen.   

Abstract

Methyl-ation of [1-hy-droxy-3-(pyridin-2-yl)indolizin-2-yl](pyridin-2-yl)methanone was performed via metalation with potassium tert-butano-late in toluene and a subsequent metathesis reaction with methyl iodide yielded the yellow title compound, C(20)H(15)N(3)O(2). The substituents at the indolizine unit are twisted [the indolizine ring system makes dihedral angles of 34.67 (7) and 77.49 (5)°, respectively, with the pyridyl and pyridinoyl rings] with single bonds between the central unit and the attached pyridine ring [1.459 (3) Å] and the pyridinoyl group [1.483 (3) Å]. There are no classical hydrogen bonds in the crystal structure.

Entities:  

Year:  2012        PMID: 22969532      PMCID: PMC3435659          DOI: 10.1107/S160053681203396X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Indolizines are used as dyes (Weidner et al., 1989 ▶), pharmaceuticals (Singh & Mmatli, 2011 ▶), and spectroscopic sensitizers (Gilchrist, 2001 ▶; Katrizky et al., 1999 ▶; Sarkunam & Nallu, 2005 ▶; Vemula et al., 2011 ▶; Weeler, 1985a ▶,b ▶). Indolizines are rather scarce in nature whereas the reduced form of these heteroaromatic bicyclic compounds, the indolizidines, are quite common, see: Michael (2007 ▶) and references therein. Well defined substitution patterns are required (Sarkunam & Nallu, 2005 ▶; Swinbourne et al., 1978 ▶; Uchida & Matsumoto, 1976 ▶) and therefore, different transition-metal mediated and metal-free strategies for the synthesis of substituted indolizines have been developed (Jacobs et al., 2011 ▶; Swinbourne et al., 1978 ▶; Kel’in et al., 2001 ▶; Kim et al., 2010 ▶; Liu et al., 2007 ▶; Morra et al., 2006 ▶; Seregin & Gevorgyan, 2006 ▶; Yan & Liu, 2007 ▶). Pyridinium N-methyl­ides react with acetyl­enes or with ethyl­enes in the presence of an oxidant to make indolizines (Miki et al., 1984 ▶; Padwa et al., 1993; ▶ Wei et al., 1993 ▶). For cyclization of 1,1-diacetyl-2-(2-pyrid­yl)ethyl­ene in acetic acid anhydride or in dimethyl­sulfoxide-yielding indolizines, see: Pohjala (1974 ▶, 1977 ▶).

Experimental

Crystal data

C20H15N3O2 M = 329.35 Monoclinic, a = 25.822 (2) Å b = 11.4406 (9) Å c = 11.3602 (7) Å β = 107.070 (4)° V = 3208.2 (4) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 183 K 0.05 × 0.05 × 0.05 mm

Data collection

Nonius KappaCCD diffractometer 10598 measured reflections 3667 independent reflections 2207 reflections with I > 2σ(I) R int = 0.070

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.132 S = 1.03 3667 reflections 275 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.28 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: DENZO (Otwinowski, Minor, 1997 ▶); data reduction: DENZO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681203396X/gg2090sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681203396X/gg2090Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681203396X/gg2090Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H15N3O2F(000) = 1376
Mr = 329.35Dx = 1.364 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 10598 reflections
a = 25.822 (2) Åθ = 1.7–27.5°
b = 11.4406 (9) ŵ = 0.09 mm1
c = 11.3602 (7) ÅT = 183 K
β = 107.070 (4)°Prism, brown
V = 3208.2 (4) Å30.05 × 0.05 × 0.05 mm
Z = 8
Nonius KappaCCD diffractometer2207 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.070
Graphite monochromatorθmax = 27.5°, θmin = 1.7°
phi– + ω–scanh = −29→33
10598 measured reflectionsk = −14→14
3667 independent reflectionsl = −14→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0651P)2] where P = (Fo2 + 2Fc2)/3
3667 reflections(Δ/σ)max < 0.001
275 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.04698 (6)0.09288 (12)0.06993 (13)0.0364 (4)
O20.12184 (6)0.12783 (12)0.35467 (12)0.0383 (4)
N10.15233 (6)0.26387 (13)0.01130 (13)0.0259 (4)
N20.22178 (7)0.32179 (13)0.33083 (14)0.0285 (4)
N30.08352 (7)0.41960 (14)0.28790 (15)0.0348 (4)
C10.18167 (9)0.29453 (18)−0.06859 (18)0.0315 (5)
H10.2132 (10)0.3465 (18)−0.0350 (19)0.042 (6)*
C20.16708 (9)0.25249 (19)−0.18445 (19)0.0365 (5)
H20.1893 (9)0.2805 (18)−0.238 (2)0.042 (6)*
C30.12207 (10)0.17639 (19)−0.22799 (19)0.0381 (5)
H30.1124 (9)0.1416 (18)−0.313 (2)0.039 (6)*
C40.09303 (9)0.14572 (17)−0.15113 (17)0.0328 (5)
H40.0638 (9)0.0923 (18)−0.1749 (18)0.032 (6)*
C50.10777 (8)0.18737 (16)−0.02876 (17)0.0272 (4)
C60.08989 (8)0.16467 (15)0.07313 (17)0.0276 (4)
C70.12235 (8)0.22698 (15)0.17367 (16)0.0254 (4)
C80.16079 (8)0.28941 (15)0.13492 (16)0.0248 (4)
C90.20472 (8)0.35985 (16)0.21281 (16)0.0265 (4)
C100.22672 (9)0.45894 (18)0.17435 (19)0.0323 (5)
H100.2123 (9)0.4926 (19)0.095 (2)0.041 (6)*
C110.26848 (9)0.51716 (19)0.2576 (2)0.0388 (5)
H110.2828 (9)0.5875 (19)0.2335 (19)0.045 (6)*
C120.28677 (9)0.47791 (19)0.3779 (2)0.0383 (5)
H120.3157 (10)0.513 (2)0.442 (2)0.060 (7)*
C130.26168 (8)0.38150 (18)0.40973 (18)0.0328 (5)
H130.2725 (8)0.3486 (16)0.4960 (19)0.033 (5)*
C140.11818 (8)0.22114 (17)0.30094 (17)0.0270 (4)
C150.10492 (8)0.32971 (16)0.36106 (16)0.0271 (4)
C160.11300 (9)0.3300 (2)0.48702 (19)0.0372 (5)
H160.1298 (9)0.2654 (18)0.5342 (18)0.031 (5)*
C170.09646 (10)0.4251 (2)0.5409 (2)0.0424 (6)
H170.1002 (10)0.425 (2)0.629 (2)0.053 (7)*
C180.07292 (9)0.5171 (2)0.4673 (2)0.0404 (6)
H180.0603 (9)0.5834 (19)0.500 (2)0.045 (6)*
C190.06806 (10)0.5113 (2)0.3431 (2)0.0423 (6)
H190.0544 (10)0.576 (2)0.290 (2)0.056 (7)*
C20−0.00098 (11)0.1550 (2)0.0648 (3)0.0683 (8)
H20C−0.03000.09950.06430.102*
H20B−0.01170.2023−0.01040.102*
H20A0.00550.20610.13690.102*
U11U22U33U12U13U23
O10.0330 (9)0.0298 (8)0.0470 (9)−0.0081 (6)0.0125 (7)−0.0046 (6)
O20.0521 (10)0.0285 (8)0.0367 (8)−0.0005 (7)0.0169 (7)0.0041 (6)
N10.0272 (9)0.0271 (9)0.0239 (8)0.0024 (7)0.0082 (7)0.0018 (7)
N20.0298 (10)0.0293 (8)0.0260 (8)−0.0013 (7)0.0074 (7)−0.0022 (7)
N30.0443 (11)0.0292 (9)0.0332 (9)0.0047 (8)0.0151 (8)0.0022 (8)
C10.0309 (12)0.0356 (12)0.0302 (11)0.0044 (10)0.0123 (9)0.0043 (9)
C20.0423 (13)0.0419 (13)0.0286 (11)0.0085 (10)0.0154 (10)0.0058 (10)
C30.0507 (15)0.0377 (12)0.0248 (11)0.0066 (11)0.0091 (10)−0.0013 (9)
C40.0414 (14)0.0261 (11)0.0272 (11)0.0018 (10)0.0042 (9)−0.0014 (9)
C50.0292 (11)0.0221 (9)0.0290 (10)0.0023 (8)0.0067 (8)−0.0016 (8)
C60.0280 (11)0.0221 (10)0.0326 (10)0.0002 (8)0.0087 (8)−0.0015 (8)
C70.0273 (11)0.0215 (9)0.0272 (10)0.0026 (8)0.0079 (8)0.0003 (8)
C80.0279 (11)0.0203 (9)0.0255 (9)0.0010 (8)0.0068 (8)−0.0004 (8)
C90.0289 (11)0.0256 (10)0.0266 (10)0.0021 (8)0.0105 (8)−0.0015 (8)
C100.0352 (12)0.0305 (11)0.0325 (11)−0.0017 (9)0.0119 (9)0.0029 (9)
C110.0369 (13)0.0300 (11)0.0514 (14)−0.0090 (10)0.0159 (10)−0.0018 (10)
C120.0356 (13)0.0374 (12)0.0399 (12)−0.0067 (10)0.0080 (10)−0.0084 (10)
C130.0347 (13)0.0337 (11)0.0289 (11)−0.0004 (9)0.0076 (9)−0.0032 (9)
C140.0263 (11)0.0260 (10)0.0282 (10)−0.0023 (8)0.0070 (8)0.0019 (8)
C150.0280 (11)0.0258 (10)0.0297 (10)−0.0048 (8)0.0119 (8)−0.0003 (8)
C160.0452 (14)0.0382 (12)0.0295 (11)−0.0028 (11)0.0129 (10)0.0017 (10)
C170.0554 (16)0.0420 (13)0.0342 (12)−0.0089 (11)0.0199 (11)−0.0096 (11)
C180.0443 (14)0.0343 (12)0.0492 (14)−0.0100 (11)0.0241 (11)−0.0168 (11)
C190.0497 (15)0.0322 (12)0.0485 (14)0.0073 (11)0.0202 (11)0.0026 (11)
C200.0404 (16)0.0635 (18)0.109 (2)−0.0123 (14)0.0349 (15)−0.0344 (16)
O1—C61.371 (2)C8—C91.459 (3)
O1—C201.414 (3)C9—C101.395 (3)
O2—C141.220 (2)C10—C111.379 (3)
N1—C11.387 (2)C10—H100.95 (2)
N1—C81.387 (2)C11—C121.383 (3)
N1—C51.411 (2)C11—H110.96 (2)
N2—C131.338 (2)C12—C131.380 (3)
N2—C91.354 (2)C12—H120.97 (2)
N3—C151.336 (2)C13—H131.01 (2)
N3—C191.341 (3)C14—C151.505 (3)
C1—C21.347 (3)C15—C161.384 (3)
C1—H10.99 (2)C16—C171.376 (3)
C2—C31.420 (3)C16—H160.94 (2)
C2—H21.00 (2)C17—C181.371 (3)
C3—C41.353 (3)C17—H170.98 (2)
C3—H31.01 (2)C18—C191.382 (3)
C4—C51.412 (3)C18—H180.94 (2)
C4—H40.95 (2)C19—H190.96 (3)
C5—C61.391 (3)C20—H20C0.9800
C6—C71.398 (3)C20—H20B0.9800
C7—C81.395 (3)C20—H20A0.9800
C7—C141.483 (3)
C6—O1—C20113.04 (16)C9—C10—H10122.9 (13)
C1—N1—C8130.92 (17)C10—C11—C12119.5 (2)
C1—N1—C5119.75 (16)C10—C11—H11119.9 (13)
C8—N1—C5109.17 (15)C12—C11—H11120.4 (13)
C13—N2—C9117.51 (17)C13—C12—C11117.9 (2)
C15—N3—C19115.91 (17)C13—C12—H12116.9 (14)
C2—C1—N1119.9 (2)C11—C12—H12125.2 (14)
C2—C1—H1123.6 (12)N2—C13—C12124.12 (19)
N1—C1—H1116.4 (12)N2—C13—H13113.5 (11)
C1—C2—C3121.7 (2)C12—C13—H13122.3 (11)
C1—C2—H2115.6 (12)O2—C14—C7120.69 (17)
C3—C2—H2122.7 (12)O2—C14—C15119.34 (17)
C4—C3—C2119.1 (2)C7—C14—C15119.79 (16)
C4—C3—H3119.4 (12)N3—C15—C16123.41 (18)
C2—C3—H3121.5 (12)N3—C15—C14117.44 (16)
C3—C4—C5120.5 (2)C16—C15—C14119.08 (18)
C3—C4—H4122.0 (12)C17—C16—C15119.3 (2)
C5—C4—H4117.4 (12)C17—C16—H16121.3 (12)
C6—C5—N1106.62 (15)C15—C16—H16119.4 (12)
C6—C5—C4134.18 (19)C18—C17—C16118.4 (2)
N1—C5—C4119.05 (18)C18—C17—H17120.9 (14)
O1—C6—C5123.57 (16)C16—C17—H17120.6 (14)
O1—C6—C7127.84 (17)C17—C18—C19118.5 (2)
C5—C6—C7108.59 (17)C17—C18—H18121.3 (13)
C8—C7—C6108.36 (16)C19—C18—H18120.2 (13)
C8—C7—C14126.37 (16)N3—C19—C18124.4 (2)
C6—C7—C14125.17 (17)N3—C19—H19115.0 (14)
N1—C8—C7107.24 (15)C18—C19—H19120.6 (14)
N1—C8—C9126.40 (17)O1—C20—H20C109.5
C7—C8—C9126.14 (16)O1—C20—H20B109.5
N2—C9—C10121.83 (17)H20C—C20—H20B109.5
N2—C9—C8113.07 (16)O1—C20—H20A109.5
C10—C9—C8125.07 (17)H20C—C20—H20A109.5
C11—C10—C9119.08 (19)H20B—C20—H20A109.5
C11—C10—H10117.7 (13)
  7 in total

Review 1.  Recent progress in synthesis and bioactivity studies of indolizines.

Authors:  Girija S Singh; Edward E Mmatli
Journal:  Eur J Med Chem       Date:  2011-09-06       Impact factor: 6.514

2.  An efficient preparation of indolizines through a tandem palladium-catalyzed cross-coupling reaction and cycloisomerization.

Authors:  Hyunseok Kim; Kwangmoo Lee; Sunggak Kim; Phil Ho Lee
Journal:  Chem Commun (Camb)       Date:  2010-08-03       Impact factor: 6.222

3.  Gold-catalyzed 1,2-migration of silicon, tin, and germanium en route to C-2 substituted fused pyrrole-containing heterocycles.

Authors:  Ilya V Seregin; Vladimir Gevorgyan
Journal:  J Am Chem Soc       Date:  2006-09-20       Impact factor: 15.419

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  General and direct synthesis of 3-aminoindolizines and their analogues via Pd/Cu-catalyzed sequential cross-coupling/cycloisomerization reactions.

Authors:  Yuanhong Liu; Zhiquan Song; Bin Yan
Journal:  Org Lett       Date:  2007-02-01       Impact factor: 6.005

6.  A novel Cu-assisted cycloisomerization of alkynyl imines: efficient synthesis of pyrroles and pyrrole-containing heterocycles.

Authors:  A V Kel'in; A W Sromek; V Gevorgyan
Journal:  J Am Chem Soc       Date:  2001-03-07       Impact factor: 15.419

7.  Gold-catalyzed multicomponent synthesis of aminoindolizines from aldehydes, amines, and alkynes under solvent-free conditions or in water.

Authors:  Bin Yan; Yuanhong Liu
Journal:  Org Lett       Date:  2007-09-14       Impact factor: 6.005

  7 in total
  1 in total

1.  12-(4-Meth-oxy-benzo-yl)-2-methyl-benzo[f]pyrido[1,2-a]indole-6,11-dione.

Authors:  J Josephine Novina; G Vasuki; Yun Liu; Jin-Wei Sun
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  1 in total

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