Literature DB >> 22969530

2-[(E)-(Naphthalen-2-yl)imino-meth-yl]phenol.

Hafiz Muhammad Adeel Sharif, Dildar Ahmed Alvi, S Yousuf.   

Abstract

In the title compound, C(17)H(13)NO, the azomethine double bond adopts an E conformation. The naphthyl ring system and the benzene ring form a dihedral angle of 8.09 (10)°. The near-planar conformation of the molecule is consolidated by an intra-molecular O-H⋯N hydrogen bond, which forms an S(6) ring. In the crystal, mol-ecules are arranged in a zigzag fashion parallel to the c axis.

Entities:  

Year:  2012        PMID: 22969530      PMCID: PMC3435657          DOI: 10.1107/S1600536812033843

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of Schiff bases, see: Khan et al. (2009 ▶). For the crystal structure of a closely related Schiff base, see: Aslam et al. (2012 ▶).

Experimental

Crystal data

C17H13NO M = 247.28 Orthorhombic, a = 13.6348 (17) Å b = 5.8768 (7) Å c = 15.869 (2) Å V = 1271.5 (3) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 273 K 0.15 × 0.13 × 0.10 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.988, T max = 0.992 6852 measured reflections 2300 independent reflections 1655 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.089 S = 1.00 2300 reflections 176 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.08 e Å−3 Δρmin = −0.09 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812033843/pv2571sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812033843/pv2571Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812033843/pv2571Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H13NOF(000) = 520
Mr = 247.28Dx = 1.292 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 1294 reflections
a = 13.6348 (17) Åθ = 2.6–27.8°
b = 5.8768 (7) ŵ = 0.08 mm1
c = 15.869 (2) ÅT = 273 K
V = 1271.5 (3) Å3Block, yellow
Z = 40.15 × 0.13 × 0.10 mm
Bruker SMART APEX CCD area-detector diffractometer2300 independent reflections
Radiation source: fine-focus sealed tube1655 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
ω scanθmax = 25.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −16→16
Tmin = 0.988, Tmax = 0.992k = −7→6
6852 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.089H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0383P)2] where P = (Fo2 + 2Fc2)/3
2300 reflections(Δ/σ)max < 0.001
176 parametersΔρmax = 0.08 e Å3
2 restraintsΔρmin = −0.09 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.51540 (13)1.1177 (3)0.40612 (13)0.0846 (6)
N10.58509 (13)0.7914 (3)0.50171 (12)0.0592 (5)
C10.73882 (15)0.8452 (4)0.56875 (14)0.0542 (5)
H1B0.74130.98510.54150.065*
C20.81650 (15)0.7835 (4)0.62265 (13)0.0519 (5)
C30.89755 (15)0.9265 (4)0.63756 (14)0.0626 (6)
H3A0.90121.06620.61030.075*
C40.97028 (19)0.8641 (4)0.69100 (17)0.0718 (7)
H4A1.02290.96160.70010.086*
C50.96686 (19)0.6547 (5)0.73249 (15)0.0707 (7)
H5A1.01670.61400.76950.085*
C60.89085 (18)0.5111 (4)0.71880 (14)0.0664 (7)
H6A0.89010.37020.74550.080*
C70.81231 (16)0.5715 (4)0.66451 (13)0.0552 (6)
C80.73097 (17)0.4295 (4)0.64880 (16)0.0662 (7)
H8A0.72740.28830.67500.079*
C90.65784 (16)0.4950 (4)0.59615 (17)0.0694 (7)
H9A0.60510.39770.58690.083*
C100.66026 (15)0.7071 (3)0.55524 (14)0.0527 (5)
C110.50538 (16)0.6824 (4)0.49001 (14)0.0591 (6)
H11A0.49760.54000.51470.071*
C120.42625 (15)0.7755 (4)0.43905 (13)0.0538 (6)
C130.33980 (16)0.6545 (4)0.43146 (16)0.0676 (6)
H13A0.33400.51370.45770.081*
C140.26177 (19)0.7392 (5)0.38553 (15)0.0753 (7)
H14A0.20400.65590.38080.090*
C150.27038 (18)0.9489 (5)0.34667 (16)0.0738 (7)
H15A0.21791.00670.31590.089*
C160.35529 (17)1.0725 (5)0.35294 (16)0.0709 (7)
H16A0.36061.21210.32570.085*
C170.43405 (15)0.9890 (4)0.40022 (15)0.0596 (6)
H1C0.5580 (15)1.045 (4)0.4354 (15)0.085 (9)*
U11U22U33U12U13U23
O10.0667 (11)0.0733 (12)0.1138 (16)−0.0103 (10)−0.0150 (11)0.0200 (12)
N10.0481 (10)0.0643 (12)0.0652 (12)0.0001 (9)−0.0006 (9)0.0003 (10)
C10.0549 (12)0.0528 (13)0.0549 (13)0.0019 (10)0.0028 (11)0.0091 (11)
C20.0526 (12)0.0541 (13)0.0490 (13)0.0030 (10)0.0050 (10)0.0028 (12)
C30.0625 (14)0.0623 (15)0.0628 (15)−0.0067 (12)−0.0046 (12)0.0083 (13)
C40.0656 (16)0.080 (2)0.0693 (15)−0.0074 (13)−0.0103 (14)−0.0022 (15)
C50.0682 (16)0.0849 (19)0.0589 (14)0.0102 (14)−0.0107 (12)0.0035 (15)
C60.0729 (17)0.0688 (15)0.0576 (16)0.0126 (14)0.0048 (14)0.0094 (13)
C70.0581 (13)0.0592 (14)0.0484 (13)0.0059 (11)0.0069 (11)0.0063 (12)
C80.0656 (16)0.0570 (14)0.0759 (17)−0.0038 (12)0.0015 (14)0.0200 (13)
C90.0588 (14)0.0648 (16)0.0847 (17)−0.0092 (12)0.0021 (14)0.0113 (15)
C100.0483 (12)0.0548 (14)0.0551 (13)0.0041 (10)0.0036 (12)0.0051 (12)
C110.0591 (14)0.0567 (13)0.0616 (15)0.0047 (11)0.0037 (12)−0.0055 (12)
C120.0506 (12)0.0585 (14)0.0523 (13)0.0013 (11)0.0029 (10)−0.0084 (12)
C130.0669 (14)0.0712 (16)0.0649 (15)−0.0051 (13)−0.0020 (13)−0.0112 (14)
C140.0649 (15)0.095 (2)0.0659 (17)−0.0086 (14)−0.0118 (13)−0.0116 (16)
C150.0617 (15)0.096 (2)0.0642 (16)0.0132 (14)−0.0109 (13)−0.0180 (16)
C160.0726 (16)0.0752 (18)0.0649 (16)0.0103 (14)−0.0071 (15)−0.0064 (14)
C170.0521 (13)0.0641 (15)0.0627 (15)0.0007 (11)0.0031 (12)−0.0067 (13)
O1—C171.346 (3)C7—C81.410 (3)
O1—H1C0.86 (2)C8—C91.356 (3)
N1—C111.275 (2)C8—H8A0.9300
N1—C101.421 (2)C9—C101.406 (3)
C1—C101.361 (3)C9—H9A0.9300
C1—C21.409 (3)C11—C121.455 (3)
C1—H1B0.9300C11—H11A0.9300
C2—C31.408 (3)C12—C131.382 (3)
C2—C71.413 (3)C12—C171.402 (3)
C3—C41.355 (3)C13—C141.382 (3)
C3—H3A0.9300C13—H13A0.9300
C4—C51.396 (3)C14—C151.383 (3)
C4—H4A0.9300C14—H14A0.9300
C5—C61.354 (3)C15—C161.370 (3)
C5—H5A0.9300C15—H15A0.9300
C6—C71.419 (3)C16—C171.399 (3)
C6—H6A0.9300C16—H16A0.9300
C17—O1—H1C108.4 (18)C8—C9—H9A119.4
C11—N1—C10121.78 (19)C10—C9—H9A119.4
C10—C1—C2122.3 (2)C1—C10—C9118.3 (2)
C10—C1—H1B118.9C1—C10—N1116.99 (18)
C2—C1—H1B118.9C9—C10—N1124.66 (19)
C3—C2—C1122.6 (2)N1—C11—C12121.6 (2)
C3—C2—C7118.60 (19)N1—C11—H11A119.2
C1—C2—C7118.80 (19)C12—C11—H11A119.2
C4—C3—C2121.2 (2)C13—C12—C17119.1 (2)
C4—C3—H3A119.4C13—C12—C11119.2 (2)
C2—C3—H3A119.4C17—C12—C11121.6 (2)
C3—C4—C5120.6 (2)C12—C13—C14121.2 (2)
C3—C4—H4A119.7C12—C13—H13A119.4
C5—C4—H4A119.7C14—C13—H13A119.4
C6—C5—C4119.9 (2)C13—C14—C15119.4 (2)
C6—C5—H5A120.0C13—C14—H14A120.3
C4—C5—H5A120.0C15—C14—H14A120.3
C5—C6—C7121.3 (2)C16—C15—C14120.8 (2)
C5—C6—H6A119.4C16—C15—H15A119.6
C7—C6—H6A119.4C14—C15—H15A119.6
C8—C7—C2118.1 (2)C15—C16—C17120.1 (3)
C8—C7—C6123.5 (2)C15—C16—H16A120.0
C2—C7—C6118.4 (2)C17—C16—H16A120.0
C9—C8—C7121.3 (2)O1—C17—C16118.2 (2)
C9—C8—H8A119.4O1—C17—C12122.3 (2)
C7—C8—H8A119.4C16—C17—C12119.4 (2)
C8—C9—C10121.2 (2)
C10—C1—C2—C3−179.4 (2)C8—C9—C10—C10.9 (3)
C10—C1—C2—C7−0.4 (3)C8—C9—C10—N1−177.6 (2)
C1—C2—C3—C4178.8 (2)C11—N1—C10—C1−174.8 (2)
C7—C2—C3—C4−0.2 (3)C11—N1—C10—C93.8 (3)
C2—C3—C4—C50.3 (4)C10—N1—C11—C12176.38 (18)
C3—C4—C5—C60.7 (4)N1—C11—C12—C13−177.2 (2)
C4—C5—C6—C7−1.8 (4)N1—C11—C12—C170.2 (3)
C3—C2—C7—C8−179.76 (19)C17—C12—C13—C140.8 (3)
C1—C2—C7—C81.2 (3)C11—C12—C13—C14178.27 (19)
C3—C2—C7—C6−0.9 (3)C12—C13—C14—C15−0.1 (3)
C1—C2—C7—C6−179.89 (19)C13—C14—C15—C160.3 (4)
C5—C6—C7—C8−179.3 (2)C14—C15—C16—C17−1.1 (4)
C5—C6—C7—C21.9 (3)C15—C16—C17—O1−178.7 (2)
C2—C7—C8—C9−1.0 (3)C15—C16—C17—C121.7 (3)
C6—C7—C8—C9−179.8 (2)C13—C12—C17—O1178.9 (2)
C7—C8—C9—C10−0.1 (4)C11—C12—C17—O11.5 (3)
C2—C1—C10—C9−0.7 (3)C13—C12—C17—C16−1.6 (3)
C2—C1—C10—N1177.97 (18)C11—C12—C17—C16−179.0 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1C···N10.86 (2)1.86 (2)2.623 (3)147 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1C⋯N10.86 (2)1.86 (2)2.623 (3)147 (2)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of bis-Schiff bases of isatins and their antiglycation activity.

Authors:  Khalid Mohammed Khan; Momin Khan; Muhammad Ali; Muhammad Taha; Saima Rasheed; Shahnaz Perveen; M Iqbal Choudhary
Journal:  Bioorg Med Chem       Date:  2009-09-19       Impact factor: 3.641

3.  2-[(2-Meth-oxy-benzyl-idene)amino]-phenol.

Authors:  M Aslam; I Anis; N Afza; M T Hussain; S Yousuf
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-21

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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