Literature DB >> 22969455

[μ-N,N'-Bis(2-amino-eth-yl)ethane-1,2-diamine-κ(4)N(1),N(1'):N(2),N(2')]bis-{[N,N'-bis-(2-amino-eth-yl)ethane-1,2-diamine-κ(4)N,N',N'',N''']cadmium} tetra-kis-(perchlorate).

Hamid Goudarziafshar, Yunes Abbasityula, Václav Eigner, Michal Dušek.   

Abstract

The centrosymmetric dinuclear cadmium title complex, [Cd(2)(C(6)H(18)N(4))(3)](ClO(4))(4), was obtained by the reaction of N,N'-bis-(2-amino-eth-yl)ethane-1,2-diamine (trien) with Cd(NO(3))(2)·4H(2)O and sodium perchlorate in methanol. The Cd(II) cation is coordinated by four N atoms of a non-bridging trien ligand and by two N atoms of a bridging trien ligand in a slightly distorted octa-hedral coordination geometry. The bridging ligand shares another two N atoms with a neighboring symmetry-equivalent Cd(II) cation. The structure displays C-H⋯O and N-H⋯O hydrogen bonding. The perchlorate anion is disordered over two sets of sites in a 0.854 (7): 0.146 (7) ratio.

Entities:  

Year:  2012        PMID: 22969455      PMCID: PMC3435582          DOI: 10.1107/S1600536812033880

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Polyamines are an important class of N-donor ligands, particularly for transition metals, see: Patel et al. (2007 ▶); Blackman (2005 ▶). For polynuclear complexes, see: Gustafsson et al. (2010 ▶); Ambrosi et al. (2009 ▶); You et al. (2011 ▶). For polynuclear complexes of cadmium, see: Evans & Lin (2002 ▶); For background to the use of the trien ligand in complexation, see: Cai et al. (2001a ▶,b ▶); Buckingham et al. (1974 ▶, 1975 ▶); Chowdhury et al. (2007 ▶). Buckingham & Jones (1965 ▶); Shinohara et al. (1991 ▶); He (2009 ▶); Patel et al. (2008 ▶); Anderson et al. (1977 ▶); Shoukry et al. (1998 ▶); Hu et al. (2000 ▶). For dinuclear Cd complexes, see: Das et al. (2010 ▶); Nie et al. (2010 ▶); Wang et al. (2011 ▶); Sun et al. (2010 ▶). For details of the preparation, see: Harrowfield et al. (1996 ▶).

Experimental

Crystal data

[Cd2(C6H18N4)3](ClO4)4 M = 1061.3 Monoclinic, a = 8.8056 (2) Å b = 15.0259 (3) Å c = 14.7516 (3) Å β = 95.4420 (17)° V = 1943.02 (7) Å3 Z = 2 Mo Kα radiation μ = 1.45 mm−1 T = 120 K 0.70 × 0.51 × 0.33 mm

Data collection

Agilent Xcalibur Atlas Gemini ultra diffractometer Absorption correction: analytical (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.509, T max = 0.738 31295 measured reflections 4952 independent reflections 4373 reflections with I > 3σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.106 S = 2.02 4952 reflections 269 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.13 e Å−3 Δρmin = −0.92 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: JANA2006 (Petříček et al., 2006 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812033880/ru2040sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812033880/ru2040Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd2(C6H18N4)3](ClO4)4F(000) = 1076
Mr = 1061.3Dx = 1.814 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.7107 Å
Hall symbol: -P 2ynCell parameters from 17686 reflections
a = 8.8056 (2) Åθ = 2.9–29.3°
b = 15.0259 (3) ŵ = 1.45 mm1
c = 14.7516 (3) ÅT = 120 K
β = 95.4420 (17)°Prism, colourless
V = 1943.02 (7) Å30.70 × 0.51 × 0.33 mm
Z = 2
Agilent Xcalibur Atlas Gemini ultra diffractometer4952 independent reflections
Radiation source: Enhance (Mo) X-ray Source4373 reflections with I > 3σ(I)
Graphite monochromatorRint = 0.022
Detector resolution: 10.3784 pixels mm-1θmax = 29.4°, θmin = 2.9°
ω scansh = −11→12
Absorption correction: analytical (CrysAlis PRO; Agilent, 2012)k = −19→20
Tmin = 0.509, Tmax = 0.738l = −20→19
31295 measured reflections
Refinement on F282 constraints
R[F2 > 2σ(F2)] = 0.030H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.106Weighting scheme based on measured s.u.'s w = 1/(σ2(I) + 0.0016I2)
S = 2.02(Δ/σ)max = 0.045
4952 reflectionsΔρmax = 1.13 e Å3
269 parametersΔρmin = −0.92 e Å3
0 restraints
Experimental. Absorption correction: analytical: CrysAlisPro, Agilent Technologies, Version 1.171.35.19 Analytical numeric absorption correction based on crystal shape
xyzUiso*/UeqOcc. (<1)
Cd10.286722 (18)0.787742 (11)0.064763 (11)0.01848 (7)
N10.5386 (3)0.73266 (16)0.08829 (18)0.0272 (7)
C20.5399 (3)0.63634 (18)0.0671 (2)0.0292 (8)
C30.4054 (3)0.59042 (17)0.10338 (19)0.0283 (8)
N40.2615 (2)0.62928 (15)0.06265 (14)0.0228 (6)
C50.1244 (3)0.60375 (18)0.10733 (18)0.0300 (8)
C6−0.0058 (3)0.6674 (2)0.08095 (19)0.0319 (9)
N70.0352 (3)0.76022 (18)0.10385 (16)0.0277 (7)
C80.0284 (3)0.78350 (18)0.1997 (2)0.0330 (9)
C90.1157 (3)0.8669 (2)0.22447 (19)0.0354 (9)
N100.2773 (3)0.85403 (16)0.21066 (15)0.0286 (7)
N110.2454 (3)0.77849 (15)−0.09631 (18)0.0296 (7)
C120.2788 (3)0.86355 (17)−0.14108 (17)0.0274 (8)
C130.2345 (3)0.94099 (17)−0.08204 (17)0.0231 (7)
N140.3148 (2)0.93478 (13)0.00986 (14)0.0183 (6)
C150.4798 (3)0.95387 (15)0.01611 (16)0.0200 (7)
H1c20.6329770.6103360.0941870.035*
H2c20.5352460.6282410.0023520.035*
H1c30.4078280.5281280.0891180.034*
H2c30.4117840.5969780.1683670.034*
H1c50.1478320.6046080.1722190.036*
H2c50.0943480.5444110.0893980.036*
H1c6−0.0351840.6627060.0167750.0383*
H2c6−0.0931230.6505240.1113220.0383*
H1c80.0689710.7354360.23740.0396*
H2c8−0.0761020.7912290.2115360.0396*
H1c90.1066230.8810330.2871720.0424*
H2c90.0749140.9149720.186880.0424*
H1c120.2211030.866719−0.1995790.0329*
H2c120.3857360.866777−0.148550.0329*
H1c130.2602420.996164−0.1096230.0277*
H2c130.1263850.940048−0.077910.0277*
H1c150.5300280.909867−0.0175820.024*
H2c150.5230230.9454120.0777240.024*
H1n100.331 (4)0.819 (2)0.267 (2)0.0344*
H2n100.340 (4)0.909 (2)0.227 (2)0.0344*
H1n10.574 (4)0.746 (2)0.148 (2)0.0326*
H1n7−0.025 (5)0.793 (2)0.079 (3)0.0332*
H1n140.278 (3)0.964 (2)0.037 (2)0.0219*
H2n10.604 (4)0.753 (3)0.061 (2)0.0326*
H1n110.153 (5)0.768 (2)−0.104 (3)0.0355*
H2n110.285 (4)0.736 (3)−0.133 (3)0.0355*
H1n40.241 (3)0.610 (2)−0.001 (2)0.0274*
Cl1c0.20589 (7)0.15386 (4)0.11243 (4)0.03020 (19)
O2c0.0975 (3)0.18921 (16)0.16787 (16)0.0431 (7)
O3c0.3065 (3)0.22454 (16)0.0906 (2)0.0500 (9)
O4c0.2906 (3)0.08460 (15)0.16043 (15)0.0451 (8)
O5c0.1347 (3)0.11760 (15)0.03083 (15)0.0456 (7)
Cl1a0.8393 (2)0.42448 (12)0.19271 (14)0.0246 (3)0.854 (7)
O2a0.8867 (6)0.5086 (2)0.2242 (3)0.0768 (18)0.854 (7)
O3a0.8423 (5)0.3641 (3)0.2674 (3)0.0378 (8)0.854 (7)
O4a0.6891 (4)0.4247 (3)0.1474 (3)0.0468 (11)0.854 (7)
O5a0.9442 (5)0.3933 (3)0.1297 (3)0.0388 (9)0.854 (7)
Cl1b0.8447 (14)0.4319 (9)0.2081 (8)0.0246 (3)0.146 (7)
O2b0.9407 (15)0.4949 (9)0.2534 (9)0.0768 (18)0.146 (7)
O3b0.8281 (14)0.3574 (9)0.2662 (9)0.0378 (8)0.146 (7)
O4b0.6967 (14)0.4661 (9)0.1803 (9)0.0468 (11)0.146 (7)
O5b0.9136 (14)0.4022 (9)0.1280 (9)0.0388 (9)0.146 (7)
U11U22U33U12U13U23
Cd10.01761 (13)0.01696 (13)0.02150 (13)−0.00220 (5)0.00519 (8)0.00130 (5)
N10.0215 (11)0.0231 (11)0.0368 (13)−0.0034 (9)0.0021 (10)−0.0032 (10)
C20.0242 (13)0.0229 (12)0.0407 (15)0.0027 (10)0.0053 (11)−0.0014 (11)
C30.0302 (14)0.0206 (12)0.0338 (14)−0.0002 (10)0.0015 (11)0.0043 (10)
N40.0252 (10)0.0207 (11)0.0227 (11)−0.0071 (8)0.0028 (8)0.0030 (8)
C50.0324 (14)0.0275 (13)0.0306 (14)−0.0112 (11)0.0050 (11)0.0044 (11)
C60.0200 (13)0.0419 (17)0.0339 (14)−0.0112 (11)0.0023 (10)0.0042 (12)
N70.0187 (11)0.0357 (13)0.0289 (12)0.0004 (9)0.0041 (9)0.0065 (10)
C80.0249 (14)0.0429 (17)0.0329 (15)0.0045 (11)0.0116 (12)0.0036 (11)
C90.0357 (15)0.0384 (16)0.0336 (15)0.0088 (12)0.0118 (12)−0.0014 (12)
N100.0310 (12)0.0322 (12)0.0231 (11)0.0017 (10)0.0047 (9)−0.0011 (9)
N110.0434 (15)0.0194 (11)0.0265 (12)−0.0092 (10)0.0066 (11)−0.0021 (9)
C120.0395 (15)0.0222 (12)0.0200 (11)−0.0088 (11)0.0001 (10)0.0006 (10)
C130.0214 (11)0.0208 (12)0.0263 (12)−0.0018 (9)−0.0014 (9)0.0026 (9)
N140.0182 (10)0.0148 (9)0.0224 (10)−0.0017 (7)0.0045 (8)−0.0016 (7)
C150.0189 (11)0.0173 (11)0.0234 (12)−0.0026 (9)−0.0001 (9)0.0023 (9)
Cl1c0.0298 (3)0.0308 (3)0.0297 (3)0.0041 (2)0.0011 (3)−0.0042 (2)
O2c0.0390 (12)0.0416 (11)0.0498 (14)0.0074 (10)0.0101 (10)−0.0168 (11)
O3c0.0589 (17)0.0402 (13)0.0531 (14)−0.0106 (10)0.0159 (12)−0.0020 (11)
O4c0.0614 (15)0.0400 (13)0.0329 (11)0.0157 (10)0.0003 (10)−0.0007 (9)
O5c0.0517 (14)0.0461 (13)0.0361 (11)0.0195 (10)−0.0106 (10)−0.0111 (10)
Cl1a0.0346 (4)0.0174 (5)0.0224 (8)−0.0034 (3)0.0062 (4)−0.0039 (4)
O2a0.140 (4)0.0407 (17)0.060 (3)−0.055 (2)0.064 (3)−0.0326 (18)
O3a0.0459 (16)0.0401 (14)0.0267 (10)−0.0048 (11)0.0004 (10)0.0130 (10)
O4a0.0390 (14)0.066 (2)0.0348 (16)0.0216 (14)0.0008 (11)0.0038 (15)
O5a0.0396 (18)0.0376 (16)0.0420 (13)−0.0078 (15)0.0184 (13)−0.0130 (11)
Cl1b0.0310 (4)0.0229 (5)0.0196 (8)−0.0082 (3)0.0014 (4)−0.0039 (4)
O2b0.104 (4)0.098 (2)0.031 (3)−0.084 (2)0.023 (2)−0.0276 (19)
O3b0.0424 (15)0.0356 (14)0.0350 (11)−0.0036 (11)0.0020 (10)0.0163 (10)
O4b0.0542 (15)0.049 (2)0.0374 (17)0.0258 (13)0.0073 (12)0.0057 (15)
O5b0.0368 (18)0.0497 (16)0.0314 (14)−0.0109 (14)0.0112 (13)−0.0133 (11)
Cd1—N12.362 (2)C9—H1c90.96
Cd1—N42.390 (3)C9—H2c90.96
Cd1—N72.377 (3)N11—C121.481 (4)
Cd1—N102.380 (3)N11—H1n110.82 (4)
Cd1—N112.374 (3)N11—H2n110.92 (4)
Cd1—N142.375 (2)C12—C131.526 (4)
N1—C21.481 (4)C12—H1c120.96
N1—H1n10.93 (3)C12—H2c120.96
N1—H2n10.80 (4)C13—N141.471 (3)
C2—C31.512 (4)C13—H1c130.96
C2—H1c20.96C13—H2c130.96
C2—H2c20.96N14—C151.475 (3)
C3—N41.471 (3)N14—H1n140.70 (3)
C3—H1c30.96C15—C15i1.519 (3)
C3—H2c30.96C15—H1c150.96
N4—C51.480 (4)C15—H2c150.96
C5—C61.515 (4)Cl1c—O2c1.418 (3)
C5—H1c50.96Cl1c—O3c1.439 (3)
C5—H2c50.96Cl1c—O4c1.428 (2)
C6—N71.472 (4)Cl1c—O5c1.413 (2)
C6—H1c60.96Cl1a—O2a1.397 (4)
C6—H2c60.96Cl1a—O3a1.425 (5)
N7—C81.463 (4)Cl1a—O4a1.424 (4)
N7—H1n70.78 (4)Cl1a—O5a1.449 (5)
C8—C91.497 (4)Cl1b—O2b1.397 (18)
C8—H1c80.96Cl1b—O3b1.425 (19)
C8—H2c80.96Cl1b—O4b1.424 (17)
C9—N101.469 (4)Cl1b—O5b1.449 (19)
N11—Cd1—N1473.97 (8)C8—C9—H2c9109.47
N4—Cd1—N10114.67 (9)N10—C9—H1c9109.47
N1—Cd1—N7141.90 (9)N10—C9—H2c9109.47
N4—Cd1—N14159.20 (6)H1c9—C9—H2c9109.17
Cd1—N1—C2109.72 (16)C12—N11—H1n11110 (2)
Cd1—N1—H1n1107 (2)C12—N11—H2n11103 (2)
Cd1—N1—H2n1120 (3)H1n11—N11—H2n11102 (3)
C2—N1—H1n1114 (2)N11—C12—C13109.4 (2)
C2—N1—H2n1105 (3)N11—C12—H1c12109.47
H1n1—N1—H2n1102 (3)N11—C12—H2c12109.47
N1—C2—C3110.5 (2)C13—C12—H1c12109.47
N1—C2—H1c2109.47C13—C12—H2c12109.47
N1—C2—H2c2109.47H1c12—C12—H2c12109.59
C3—C2—H1c2109.47C12—C13—N14110.6 (2)
C3—C2—H2c2109.47C12—C13—H1c13109.47
H1c2—C2—H2c2108.47C12—C13—H2c13109.47
C2—C3—N4110.3 (2)N14—C13—H1c13109.47
C2—C3—H1c3109.47N14—C13—H2c13109.47
C2—C3—H2c3109.47H1c13—C13—H2c13108.36
N4—C3—H1c3109.47C13—N14—C15115.44 (19)
N4—C3—H2c3109.47C13—N14—H1n14106 (3)
H1c3—C3—H2c3108.58C15—N14—H1n14111 (2)
C3—N4—C5115.0 (2)N14—C15—C15i114.62 (18)
N4—C5—C6110.6 (2)N14—C15—H1c15109.47
N4—C5—H1c5109.47N14—C15—H2c15109.47
N4—C5—H2c5109.47C15i—C15—H1c15109.47
C6—C5—H1c5109.47C15i—C15—H2c15109.47
C6—C5—H2c5109.47H1c15—C15—H2c15103.78
H1c5—C5—H2c5108.35O2c—Cl1c—O3c108.37 (16)
C5—C6—N7112.1 (2)O2c—Cl1c—O4c109.59 (14)
C5—C6—H1c6109.47O2c—Cl1c—O5c111.57 (14)
C5—C6—H2c6109.47O3c—Cl1c—O4c110.20 (15)
N7—C6—H1c6109.47O3c—Cl1c—O5c109.05 (16)
N7—C6—H2c6109.47O4c—Cl1c—O5c108.05 (13)
H1c6—C6—H2c6106.74O2a—Cl1a—O3a109.7 (3)
C6—N7—C8114.6 (2)O2a—Cl1a—O4a112.9 (3)
C6—N7—H1n7110 (2)O2a—Cl1a—O5a108.5 (3)
C8—N7—H1n7102 (3)O3a—Cl1a—O4a108.2 (3)
N7—C8—C9111.7 (2)O3a—Cl1a—O5a108.9 (3)
N7—C8—H1c8109.47O4a—Cl1a—O5a108.6 (3)
N7—C8—H2c8109.47O2b—Cl1b—O3b109.7 (11)
C9—C8—H1c8109.47O2b—Cl1b—O4b112.9 (11)
C9—C8—H2c8109.47O2b—Cl1b—O5b108.5 (11)
H1c8—C8—H2c8107.19O3b—Cl1b—O4b108.2 (11)
C8—C9—N10109.8 (2)O3b—Cl1b—O5b108.9 (11)
C8—C9—H1c9109.47O4b—Cl1b—O5b108.6 (11)
D—H···AD—HH···AD···AD—H···A
C5—H1c5···O4cii0.962.493.449 (3)172
C8—H2c8···O3bii0.962.483.412 (13)163
N10—H1n10···O2cii1.06 (3)2.24 (4)3.191 (3)149 (3)
N10—H2n10···O2biii1.01 (3)2.32 (3)3.268 (13)156 (3)
N1—H1n1···O3aiii0.93 (3)2.25 (3)3.018 (5)139 (3)
N1—H1n1···O3biii0.93 (3)2.22 (4)3.004 (13)141 (3)
N7—H1n7···O5civ0.78 (4)2.25 (4)2.999 (3)159 (4)
N1—H2n1···O3cv0.80 (4)2.46 (4)3.149 (4)145 (3)
N11—H1n11···O2civ0.82 (4)2.40 (4)3.140 (4)149 (3)
N11—H2n11···O4av0.92 (4)2.44 (4)3.210 (5)141 (3)
N4—H1n4···O4av0.98 (3)2.36 (3)3.271 (4)154 (2)
N4—H1n4···O5av0.98 (3)2.38 (3)3.236 (4)145 (2)
N4—H1n4···O5bv0.98 (3)2.22 (3)3.113 (13)151 (3)
Table 1

Selected bond lengths (Å)

Cd1—N12.362 (2)
Cd1—N42.390 (3)
Cd1—N72.377 (3)
Cd1—N102.380 (3)
Cd1—N112.374 (3)
Cd1—N142.375 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C5—H1c5⋯O4c i 0.962.493.449 (3)172
N1—H2n1⋯O3c ii 0.80 (4)2.46 (4)3.149 (4)145 (3)
N11—H1n11⋯O2c iii 0.82 (4)2.40 (4)3.140 (4)149 (3)
N11—H2n11⋯O4a ii 0.92 (4)2.44 (4)3.210 (5)141 (3)
N4—H1n4⋯O4a ii 0.98 (3)2.36 (3)3.271 (4)154 (2)
N4—H1n4⋯O5a ii 0.98 (3)2.38 (3)3.236 (4)145 (2)
N4—H1n4⋯O5b ii 0.98 (3)2.22 (3)3.113 (13)151 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  Acta Crystallogr B       Date:  2001-02

5.  (11,13-Dimethyl-1,4,7,10-tetra-azacyclo-trideca-10,13-dienato)copper(II) per-chlorate.

Authors:  Xiao-Qiang He
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-17

6.  Polynuclear complexes: two amino-phenol macrocycles spaced by several linear polyamines; synthesis, binding properties, and crystal structure.

Authors:  Gianluca Ambrosi; Mauro Formica; Vieri Fusi; Luca Giorgi; Eleonora Macedi; Mauro Micheloni; Paola Paoli; Patrizia Rossi
Journal:  Inorg Chem       Date:  2009-11-02       Impact factor: 5.165

7.  Bis(μ-5-carboxyl-atotetra-zolido)bis-[aqua-(2,2'-bipyrid-yl)cadmium(II)].

Authors:  Shuang-Jiao Sun; Ji-Hua Deng; Ti-Lou Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-21
  7 in total

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