Literature DB >> 21581802

(11,13-Dimethyl-1,4,7,10-tetra-azacyclo-trideca-10,13-dienato)copper(II) per-chlorate.

Xiao-Qiang He1.   

Abstract

The title complex, [Cu(C(11)H(21)N(4))]ClO(4), comprises [Cu(II)(L)](+) (L = 11,13-dimethyl-1,4,7,10-tetra-azacyclo-trideca-10,12-dien-ate) cations and a perchlorate anion. The Cu atom is located on a twofold crystallographic symmetry axis and is coordinated by four N atoms in a slightly distorted square-planar geometry. Inter-molecular N-H⋯O hydrogen bonds are present.

Entities:  

Year:  2009        PMID: 21581802      PMCID: PMC2968270          DOI: 10.1107/S1600536809001664

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For macrocyclic ligands containing four N atoms in a square-planar coordination geometry, see: Andrews et al. (1999 ▶); Kim et al. (2004 ▶); Richardson & Sievers (1972 ▶).

Experimental

Crystal data

[Cu(C11H21N4)]ClO4 M = 372.31 Orthorhombic, a = 12.530 (5) Å b = 14.469 (6) Å c = 8.501 (4) Å V = 1541.2 (11) Å3 Z = 4 Mo Kα radiation μ = 1.61 mm−1 T = 293 (2) K 0.15 × 0.13 × 0.11 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.794, T max = 0.843 6834 measured reflections 1349 independent reflections 950 reflections with I > 2σ(I) R int = 0.064

Refinement

R[F 2 > 2σ(F 2)] = 0.067 wR(F 2) = 0.216 S = 1.05 1349 reflections 98 parameters H-atom parameters constrained Δρmax = 1.10 e Å−3 Δρmin = −0.59 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Sheldrick, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809001664/hg2468sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809001664/hg2468Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C11H21N4)]ClO4F(000) = 772
Mr = 372.31Dx = 1.605 Mg m3Dm = 1.605 Mg m3Dm measured by not measured
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 1838 reflections
a = 12.530 (5) Åθ = 3.2–24.7°
b = 14.469 (6) ŵ = 1.61 mm1
c = 8.501 (4) ÅT = 293 K
V = 1541.2 (11) Å3Block, blue
Z = 40.15 × 0.13 × 0.11 mm
Bruker APEXII CCD area-detector diffractometer1349 independent reflections
Radiation source: fine-focus sealed tube950 reflections with I > 2σ(I)
graphiteRint = 0.064
φ and ω scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −14→12
Tmin = 0.794, Tmax = 0.843k = −15→17
6834 measured reflectionsl = −9→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.067Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.216H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.144P)2 + 0.9336P] where P = (Fo2 + 2Fc2)/3
1349 reflections(Δ/σ)max < 0.001
98 parametersΔρmax = 1.10 e Å3
0 restraintsΔρmin = −0.59 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.00000.32069 (5)0.25000.0431 (4)
Cl10.00000.14239 (18)0.75000.0660 (7)
O10.0525 (6)0.2000 (6)0.6429 (9)0.139 (3)
O20.0806 (8)0.0904 (4)0.8238 (11)0.160 (3)
N10.0904 (3)0.4014 (3)0.1568 (5)0.0481 (11)
N20.0740 (3)0.2278 (3)0.1414 (5)0.0476 (11)
H20.04270.22190.04530.057*
C10.00000.5334 (6)0.25000.060 (2)
H10.00000.59760.25000.072*
C20.0803 (4)0.4932 (3)0.1651 (7)0.0579 (15)
C30.1590 (5)0.5506 (4)0.0804 (9)0.078 (2)
H3A0.22980.53340.11220.117*
H3B0.14710.61460.10470.117*
H3C0.15130.5412−0.03080.117*
C40.1727 (4)0.3589 (4)0.0637 (7)0.0576 (14)
H4A0.23960.39160.07800.069*
H4B0.15370.3613−0.04690.069*
C50.1840 (4)0.2618 (4)0.1151 (8)0.0597 (14)
H5A0.22530.25810.21140.072*
H5B0.21930.22540.03470.072*
C60.0587 (5)0.1407 (4)0.2241 (7)0.0574 (15)
H6A0.10560.13690.31470.069*
H6B0.07320.08880.15520.069*
U11U22U33U12U13U23
Cu10.0446 (7)0.0320 (6)0.0526 (7)0.000−0.0004 (3)0.000
Cl10.0883 (17)0.0572 (14)0.0526 (13)0.0000.0019 (10)0.000
O10.113 (5)0.182 (6)0.122 (6)−0.012 (5)−0.020 (4)0.056 (5)
O20.244 (10)0.106 (4)0.130 (6)0.077 (6)−0.015 (7)0.003 (5)
N10.045 (2)0.039 (2)0.060 (3)−0.0019 (17)−0.004 (2)0.0077 (19)
N20.055 (3)0.038 (2)0.049 (2)0.0060 (18)0.0024 (19)0.0023 (17)
C10.069 (5)0.022 (3)0.090 (7)0.000−0.026 (5)0.000
C20.058 (3)0.041 (3)0.075 (4)−0.011 (3)−0.031 (3)0.012 (3)
C30.078 (4)0.051 (3)0.104 (5)−0.027 (3)−0.026 (4)0.020 (3)
C40.048 (3)0.057 (3)0.068 (4)−0.002 (2)0.006 (3)0.011 (3)
C50.053 (3)0.059 (3)0.068 (4)0.010 (2)0.002 (3)0.008 (3)
C60.070 (4)0.034 (3)0.068 (4)0.007 (3)0.002 (3)0.004 (2)
Cu1—N1i1.809 (4)C1—C2i1.367 (7)
Cu1—N11.809 (4)C1—H10.9300
Cu1—N2i1.876 (4)C2—C31.477 (8)
Cu1—N21.876 (4)C3—H3A0.9600
Cl1—O1ii1.399 (8)C3—H3B0.9600
Cl1—O11.399 (8)C3—H3C0.9600
Cl1—O21.407 (8)C4—C51.479 (8)
Cl1—O2ii1.407 (8)C4—H4A0.9700
N1—C21.337 (6)C4—H4B0.9700
N1—C41.438 (7)C5—H5A0.9700
N2—C61.455 (7)C5—H5B0.9700
N2—C51.481 (7)C6—C6i1.535 (13)
N2—H20.9100C6—H6A0.9700
C1—C21.367 (7)C6—H6B0.9700
N1i—Cu1—N199.6 (3)C1—C2—C3120.7 (5)
N1i—Cu1—N2i86.43 (19)C2—C3—H3A109.5
N1—Cu1—N2i170.85 (17)C2—C3—H3B109.5
N1i—Cu1—N2170.85 (17)H3A—C3—H3B109.5
N1—Cu1—N286.43 (19)C2—C3—H3C109.5
N2i—Cu1—N288.4 (2)H3A—C3—H3C109.5
O1ii—Cl1—O1106.9 (7)H3B—C3—H3C109.5
O1ii—Cl1—O2111.4 (5)N1—C4—C5108.2 (4)
O1—Cl1—O2105.8 (5)N1—C4—H4A110.1
O1ii—Cl1—O2ii105.8 (5)C5—C4—H4A110.1
O1—Cl1—O2ii111.4 (5)N1—C4—H4B110.1
O2—Cl1—O2ii115.3 (7)C5—C4—H4B110.1
C2—N1—C4121.5 (4)H4A—C4—H4B108.4
C2—N1—Cu1124.0 (4)C4—C5—N2105.8 (4)
C4—N1—Cu1114.5 (3)C4—C5—H5A110.6
C6—N2—C5118.9 (4)N2—C5—H5A110.6
C6—N2—Cu1108.5 (3)C4—C5—H5B110.6
C5—N2—Cu1107.2 (3)N2—C5—H5B110.6
C6—N2—H2107.2H5A—C5—H5B108.7
C5—N2—H2107.2N2—C6—C6i105.3 (4)
Cu1—N2—H2107.2N2—C6—H6A110.7
C2—C1—C2i129.7 (7)C6i—C6—H6A110.7
C2—C1—H1115.1N2—C6—H6B110.7
C2i—C1—H1115.1C6i—C6—H6B110.7
N1—C2—C1121.3 (6)H6A—C6—H6B108.8
N1—C2—C3118.0 (6)
D—H···AD—HH···AD···AD—H···A
N2—H2···Cl1iii0.912.813.668 (5)157
N2—H2···O1i0.912.022.917 (8)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1ii0.912.022.917 (8)168

Symmetry codes: (i) ; (ii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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1.  [μ-N,N'-Bis(2-amino-eth-yl)ethane-1,2-diamine-κ(4)N(1),N(1'):N(2),N(2')]bis-{[N,N'-bis-(2-amino-eth-yl)ethane-1,2-diamine-κ(4)N,N',N'',N''']cadmium} tetra-kis-(perchlorate).

Authors:  Hamid Goudarziafshar; Yunes Abbasityula; Václav Eigner; Michal Dušek
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