Literature DB >> 22965101

Genome sequence of the thermostable-agarase-producing marine bacterium Catenovulum agarivorans YM01(T), which reveals the presence of a series of agarase-encoding genes.

Xiaochong Shi1, Min Yu, Shulin Yan, Sujie Dong, Xiao-Hua Zhang.   

Abstract

Marine bacterium Catenovulum agarivorans YM01(T) can produce highly thermostable agarases. The draft genome of YM01(T) is about 5.36 Mb and harbors approximately 4,913 genes, including 15 agarase (2 α-agarase and 13 β-agarase)-encoding genes, which will provide references to functional characterization of various agarases from marine bacteria.

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Year:  2012        PMID： 22965101      PMCID： PMC3457198          DOI： 10.1128/JB.01283-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  5 in total

1.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

2.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Complete genome sequence of the agarase-producing marine bacterium strain s89, representing a novel species of the genus Alteromonas.

Authors:  Chulhong Oh; Mahanama De Zoysa; Young-Kyung Kwon; Soo-Jin Heo; Abu Affan; Won-Kyo Jung; Heung-Sik Park; Jehee Lee; Seung-Kyu Son; Kon-Tak Yoon; Do-Hyung Kang
Journal:  J Bacteriol       Date:  2011-10       Impact factor: 3.490

5.  Catenovulum agarivorans gen. nov., sp. nov., a peritrichously flagellated, chain-forming, agar-hydrolysing gammaproteobacterium from seawater.

Authors:  Shulin Yan; Min Yu; Yan Wang; Chen Shen; Xiao-Hua Zhang
Journal:  Int J Syst Evol Microbiol       Date:  2011-01-21       Impact factor: 2.747
  5 in total
  3 in total

1.  Overexpression and characterization of a novel thermostable β-agarase YM01-3, from marine bacterium Catenovulum agarivorans YM01(T).

Authors:  Fangyuan Cui; Sujie Dong; Xiaochong Shi; Xia Zhao; Xiao-Hua Zhang
Journal:  Mar Drugs       Date:  2014-05-12       Impact factor: 5.118

2.  Extracellular production of a novel endo-β-agarase AgaA from Pseudomonas vesicularis MA103 that cleaves agarose into neoagarotetraose and neoagarohexaose.

Authors:  Pang-Hung Hsu; Chien-Han Wei; Wen-Jung Lu; Fen Shen; Chorng-Liang Pan; Hong-Ting Victor Lin
Journal:  Int J Mol Sci       Date:  2015-03-11       Impact factor: 5.923

3.  Pangenome Evolution in the Marine Bacterium Alteromonas.

Authors:  Mario López-Pérez; Francisco Rodriguez-Valera
Journal:  Genome Biol Evol       Date:  2016-06-03       Impact factor: 3.416
  3 in total

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