Literature DB >> 22965098

Genome sequence of the rice pathogen Pseudomonas fuscovaginae CB98818.

Guanlin Xie1, Zhouqi Cui, Zhongyun Tao, Hui Qiu, He Liu, Muhammad Ibrahim, Bo Zhu, Gulei Jin, Guochang Sun, Abdulwareth Almoneafy, Bin Li.   

Abstract

Pseudomonas fuscovaginae is a phytopathogenic bacterium causing bacterial sheath brown rot of cereal crops. Here, we present the draft genome sequence of P. fuscovaginae CB98818, originally isolated from a diseased rice plant in China. The draft genome will aid in epidemiological studies, comparative genomics, and quarantine of this broad-host-range pathogen.

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Year:  2012        PMID： 22965098      PMCID： PMC3457246          DOI： 10.1128/JB.01273-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  6 in total

1.  Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence.

Authors:  Y Anzai; H Kim; J Y Park; H Wakabayashi; H Oyaizu
Journal:  Int J Syst Evol Microbiol       Date:  2000-07       Impact factor: 2.747

2.  Draft genome sequence of Pseudomonas fuscovaginae, a broad-host-range pathogen of plants.

Authors:  Hitendra Kumar Patel; Daniel Passos da Silva; Giulia Devescovi; Henri Maraite; Konrad Paszkiewicz; David J Studholme; Vittorio Venturi
Journal:  J Bacteriol       Date:  2012-05       Impact factor: 3.490

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Microbial gene identification using interpolated Markov models.

Authors:  S L Salzberg; A L Delcher; S Kasif; O White
Journal:  Nucleic Acids Res       Date:  1998-01-15       Impact factor: 16.971

5.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

6.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  6 in total
  3 in total

1.  Rice-Infecting Pseudomonas Genomes Are Highly Accessorized and Harbor Multiple Putative Virulence Mechanisms to Cause Sheath Brown Rot.

Authors:  Ian Lorenzo Quibod; Genelou Grande; Eula Gems Oreiro; Frances Nikki Borja; Gerbert Sylvestre Dossa; Ramil Mauleon; Casiana Vera Cruz; Ricardo Oliva
Journal:  PLoS One       Date:  2015-09-30       Impact factor: 3.240

2.  Identification of virulence associated loci in the emerging broad host range plant pathogen Pseudomonas fuscovaginae.

Authors:  Hitendra Kumar Patel; Maura Matiuzzo; Iris Bertani; Vincent de Paul Bigirimana; Gavin J Ash; Monica Höfte; Vittorio Venturi
Journal:  BMC Microbiol       Date:  2014-11-14       Impact factor: 3.605

Review 3.  Commonalities and differences of T3SSs in rhizobia and plant pathogenic bacteria.

Authors:  Anastasia P Tampakaki
Journal:  Front Plant Sci       Date:  2014-03-27       Impact factor: 5.753
  3 in total

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