Literature DB >> 22965095

Draft genome sequence of the marine Streptomyces sp. strain AA1529, isolated from the Yellow Sea.

Zhi-Qiang Xiong1, Yong Wang.   

Abstract

Here we report the draft genome sequence of a Streptomyces strain, AA1529, isolated from marine sediment from the Yellow Sea. Its genome contains a subset of unique genes and gene clusters that encode diverse secondary metabolites, suggesting great potential as a source for the discovery of novel gene clusters and bioactive compounds.

Entities:  

Mesh:

Year:  2012        PMID: 22965095      PMCID: PMC3457238          DOI: 10.1128/JB.01247-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  11 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  EPPS: mining the COG database by an extended phylogenetic patterns search.

Authors:  Klaus Reichard; Michael Kaufmann
Journal:  Bioinformatics       Date:  2003-04-12       Impact factor: 6.937

3.  SignalP 4.0: discriminating signal peptides from transmembrane regions.

Authors:  Thomas Nordahl Petersen; Søren Brunak; Gunnar von Heijne; Henrik Nielsen
Journal:  Nat Methods       Date:  2011-09-29       Impact factor: 28.547

4.  GeneMark.hmm: new solutions for gene finding.

Authors:  A V Lukashin; M Borodovsky
Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

5.  Characterization of Streptomyces padanus JAU4234, a producer of actinomycin X₂, fungichromin, and a new polyene macrolide antibiotic.

Authors:  Zhi-Qiang Xiong; Zhi-Ping Zhang; Jiang-Huai Li; Sai-Jin Wei; Guo-Quan Tu
Journal:  Appl Environ Microbiol       Date:  2011-11-04       Impact factor: 4.792

6.  Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).

Authors:  S D Bentley; K F Chater; A-M Cerdeño-Tárraga; G L Challis; N R Thomson; K D James; D E Harris; M A Quail; H Kieser; D Harper; A Bateman; S Brown; G Chandra; C W Chen; M Collins; A Cronin; A Fraser; A Goble; J Hidalgo; T Hornsby; S Howarth; C-H Huang; T Kieser; L Larke; L Murphy; K Oliver; S O'Neil; E Rabbinowitsch; M-A Rajandream; K Rutherford; S Rutter; K Seeger; D Saunders; S Sharp; R Squares; S Squares; K Taylor; T Warren; A Wietzorrek; J Woodward; B G Barrell; J Parkhill; D A Hopwood
Journal:  Nature       Date:  2002-05-09       Impact factor: 49.962

7.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Authors:  Marnix H Medema; Kai Blin; Peter Cimermancic; Victor de Jager; Piotr Zakrzewski; Michael A Fischbach; Tilmann Weber; Eriko Takano; Rainer Breitling
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

8.  The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.

Authors:  Peter Schattner; Angela N Brooks; Todd M Lowe
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

9.  CAMP: a useful resource for research on antimicrobial peptides.

Authors:  Shaini Thomas; Shreyas Karnik; Ram Shankar Barai; V K Jayaraman; Susan Idicula-Thomas
Journal:  Nucleic Acids Res       Date:  2009-11-18       Impact factor: 16.971

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

View more
  7 in total

Review 1.  Synbiological systems for complex natural products biosynthesis.

Authors:  Jianhua Li; Hailin Meng; Yong Wang
Journal:  Synth Syst Biotechnol       Date:  2016-10-31

2.  Acylated Aminooligosaccharides from the Yellow Sea Streptomyces sp. HO1518 as Both α-Glucosidase and Lipase Inhibitors.

Authors:  Jian-Lin Xu; Hai-Li Liu; Zhi-Feng Liu; Yu-Hong Ren; Yong Wang
Journal:  Mar Drugs       Date:  2020-11-20       Impact factor: 5.118

Review 3.  Isolation and identification of marine microbial products.

Authors:  Sahar Saleh Mohamed; Sayeda Abdelrazek Abdelhamid; Radwa Hassaan Ali
Journal:  J Genet Eng Biotechnol       Date:  2021-10-19

Review 4.  Recent advances in the discovery and development of marine microbial natural products.

Authors:  Zhi-Qiang Xiong; Jian-Feng Wang; Yu-You Hao; Yong Wang
Journal:  Mar Drugs       Date:  2013-03-08       Impact factor: 5.118

5.  High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway.

Authors:  Gro Elin Kjæreng Bjerga; Erik Hjerde; Concetta De Santi; Adele Kim Williamson; Arne Oskar Smalås; Nils Peder Willassen; Bjørn Altermark
Journal:  Stand Genomic Sci       Date:  2014-03-01

6.  Comparative Genomics Analysis of Streptomyces Species Reveals Their Adaptation to the Marine Environment and Their Diversity at the Genomic Level.

Authors:  Xinpeng Tian; Zhewen Zhang; Tingting Yang; Meili Chen; Jie Li; Fei Chen; Jin Yang; Wenjie Li; Bing Zhang; Zhang Zhang; Jiayan Wu; Changsheng Zhang; Lijuan Long; Jingfa Xiao
Journal:  Front Microbiol       Date:  2016-06-27       Impact factor: 5.640

7.  Acylated Aminooligosaccharides with Inhibitory Effects against α-Amylase from Streptomyces sp. HO1518.

Authors:  Hai-Li Liu; Heng-Chao E; Ding-An Xie; Wen-Bo Cheng; Wan-Qi Tao; Yong Wang
Journal:  Mar Drugs       Date:  2018-10-23       Impact factor: 5.118

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.