Literature DB >> 22956083

Genetic analysis of Xenopus tropicalis.

Timothy J Geach1, Derek L Stemple, Lyle B Zimmerman.   

Abstract

The pipid frog Xenopus tropicalis has emerged as a powerful new model system for combining genetic and genomic analysis of tetrapod development with robust embryological, molecular, and biochemical assays. Its early development closely resembles that of its well-understood relative X. laevis, from which techniques and reagents can be readily transferred. In contrast to the tetraploid X. laevis, X. tropicalis has a compact diploid genome with strong synteny to those of amniotes. Recently, advances in high-throughput sequencing together with solution-hybridization whole-exome enrichment technology offer powerful strategies for cloning novel mutations as well as reverse genetic identification of sequence lesions in specific genes of interest. Further advantages include the wide range of functional and molecular assays available, the large number of embryos/meioses produced, and the ease of haploid genetics and gynogenesis. The addition of these genetic tools to X. tropicalis provides a uniquely flexible platform for analysis of gene function in vertebrate development.

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Year:  2012        PMID: 22956083      PMCID: PMC4273174          DOI: 10.1007/978-1-61779-992-1_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  46 in total

1.  Inducible control of tissue-specific transgene expression in Xenopus tropicalis transgenic lines.

Authors:  Jeiwook Chae; Lyle B Zimmerman; Robert M Grainger
Journal:  Mech Dev       Date:  2002-09       Impact factor: 1.882

2.  Evolution of the closely related, sex-related genes DM-W and DMRT1 in African clawed frogs (Xenopus).

Authors:  Adam J Bewick; Dave W Anderson; Ben J Evans
Journal:  Evolution       Date:  2010-11-02       Impact factor: 3.694

3.  Transgenic Xenopus laevis strain expressing cre recombinase in muscle cells.

Authors:  Christoph Waldner; Kazuhiro Sakamaki; Naoto Ueno; Gülüzar Turan; Gerhart U Ryffel
Journal:  Dev Dyn       Date:  2006-08       Impact factor: 3.780

4.  The genome of the Western clawed frog Xenopus tropicalis.

Authors:  Uffe Hellsten; Richard M Harland; Michael J Gilchrist; David Hendrix; Jerzy Jurka; Vladimir Kapitonov; Ivan Ovcharenko; Nicholas H Putnam; Shengqiang Shu; Leila Taher; Ira L Blitz; Bruce Blumberg; Darwin S Dichmann; Inna Dubchak; Enrique Amaya; John C Detter; Russell Fletcher; Daniela S Gerhard; David Goodstein; Tina Graves; Igor V Grigoriev; Jane Grimwood; Takeshi Kawashima; Erika Lindquist; Susan M Lucas; Paul E Mead; Therese Mitros; Hajime Ogino; Yuko Ohta; Alexander V Poliakov; Nicolas Pollet; Jacques Robert; Asaf Salamov; Amy K Sater; Jeremy Schmutz; Astrid Terry; Peter D Vize; Wesley C Warren; Dan Wells; Andrea Wills; Richard K Wilson; Lyle B Zimmerman; Aaron M Zorn; Robert Grainger; Timothy Grammer; Mustafa K Khokha; Paul M Richardson; Daniel S Rokhsar
Journal:  Science       Date:  2010-04-30       Impact factor: 47.728

5.  Identification of mutants in inbred Xenopus tropicalis.

Authors:  Timothy C Grammer; Mustafa K Khokha; Maura A Lane; Kentson Lam; Richard M Harland
Journal:  Mech Dev       Date:  2005-03       Impact factor: 1.882

Review 6.  Genetic and genomic prospects for Xenopus tropicalis research.

Authors:  Samantha Carruthers; Derek L Stemple
Journal:  Semin Cell Dev Biol       Date:  2006-01-20       Impact factor: 7.727

7.  Zebrafish comparative genomics and the origins of vertebrate chromosomes.

Authors:  J H Postlethwait; I G Woods; P Ngo-Hazelett; Y L Yan; P D Kelly; F Chu; H Huang; A Hill-Force; W S Talbot
Journal:  Genome Res       Date:  2000-12       Impact factor: 9.043

8.  Targetted correction of a mutant HPRT gene in mouse embryonic stem cells.

Authors:  T Doetschman; R G Gregg; N Maeda; M L Hooper; D W Melton; S Thompson; O Smithies
Journal:  Nature       Date:  1987 Dec 10-16       Impact factor: 49.962

9.  Remobilization of Tol2 transposons in Xenopus tropicalis.

Authors:  Donald A Yergeau; Clair M Kelley; Emin Kuliyev; Haiqing Zhu; Amy K Sater; Dan E Wells; Paul E Mead
Journal:  BMC Dev Biol       Date:  2010-01-22       Impact factor: 1.978

10.  Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases.

Authors:  Yannick Doyon; Jasmine M McCammon; Jeffrey C Miller; Farhoud Faraji; Catherine Ngo; George E Katibah; Rainier Amora; Toby D Hocking; Lei Zhang; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; Sharon L Amacher
Journal:  Nat Biotechnol       Date:  2008-05-25       Impact factor: 54.908

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  2 in total

Review 1.  Expanding the genetic toolkit in Xenopus: Approaches and opportunities for human disease modeling.

Authors:  Panna Tandon; Frank Conlon; J David Furlow; Marko E Horb
Journal:  Dev Biol       Date:  2016-04-22       Impact factor: 3.582

2.  The DNA-to-cytoplasm ratio broadly activates zygotic gene expression in Xenopus.

Authors:  David Jukam; Rishabh R Kapoor; Aaron F Straight; Jan M Skotheim
Journal:  Curr Biol       Date:  2021-08-12       Impact factor: 10.900

  2 in total

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