Literature DB >> 22952394

Transcriptional networks in liver and intestinal development.

Karyn L Sheaffer1, Klaus H Kaestner.   

Abstract

The development of the gastrointestinal tract is a complex process that integrates signaling processes with downstream transcriptional responses. Here, we discuss the regionalization of the primitive gut and formation of the intestine and liver. Anterior-posterior position in the primitive gut is important for establishing regions that will become functional organs. Coordination of signaling between the epithelium and mesenchyme and downstream transcriptional responses is required for intestinal development and homeostasis. Liver development uses a complex transcriptional network that controls the establishment of organ domains, cell differentiation, and adult function. Discussion of these transcriptional mechanisms gives us insight into how the primitive gut, composed of simple endodermal cells, develops into multiple diverse cell types that are organized into complex mature organs.

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Year:  2012        PMID: 22952394      PMCID: PMC3428765          DOI: 10.1101/cshperspect.a008284

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  182 in total

1.  Lgr5(+ve) stem cells drive self-renewal in the stomach and build long-lived gastric units in vitro.

Authors:  Nick Barker; Meritxell Huch; Pekka Kujala; Marc van de Wetering; Hugo J Snippert; Johan H van Es; Toshiro Sato; Daniel E Stange; Harry Begthel; Maaike van den Born; Esther Danenberg; Stieneke van den Brink; Jeroen Korving; Arie Abo; Peter J Peters; Nick Wright; Richard Poulsom; Hans Clevers
Journal:  Cell Stem Cell       Date:  2010-01-08       Impact factor: 24.633

Review 2.  The role of Cdx genes in the gut and in axial development.

Authors:  Felix Beck; Emma J Stringer
Journal:  Biochem Soc Trans       Date:  2010-04       Impact factor: 5.407

Review 3.  Gut endocrine cell development.

Authors:  Catherine Lee May; Klaus H Kaestner
Journal:  Mol Cell Endocrinol       Date:  2009-12-16       Impact factor: 4.102

4.  Sox17 regulates organ lineage segregation of ventral foregut progenitor cells.

Authors:  Jason R Spence; Alex W Lange; Suh-Chin J Lin; Klaus H Kaestner; Andrew M Lowy; Injune Kim; Jeffrey A Whitsett; James M Wells
Journal:  Dev Cell       Date:  2009-07       Impact factor: 12.270

Review 5.  Vertebrate endoderm development and organ formation.

Authors:  Aaron M Zorn; James M Wells
Journal:  Annu Rev Cell Dev Biol       Date:  2009       Impact factor: 13.827

6.  Sustained in vitro intestinal epithelial culture within a Wnt-dependent stem cell niche.

Authors:  Akifumi Ootani; Xingnan Li; Eugenio Sangiorgi; Quoc T Ho; Hiroo Ueno; Shuji Toda; Hajime Sugihara; Kazuma Fujimoto; Irving L Weissman; Mario R Capecchi; Calvin J Kuo
Journal:  Nat Med       Date:  2009-04-27       Impact factor: 53.440

7.  Doublecortin and CaM kinase-like-1 and leucine-rich-repeat-containing G-protein-coupled receptor mark quiescent and cycling intestinal stem cells, respectively.

Authors:  Randal May; Sripathi M Sureban; Nguyet Hoang; Terrence E Riehl; Stan A Lightfoot; Rama Ramanujam; James H Wyche; Shrikant Anant; Courtney W Houchen
Journal:  Stem Cells       Date:  2009-10       Impact factor: 6.277

8.  Dissociation of EphB2 signaling pathways mediating progenitor cell proliferation and tumor suppression.

Authors:  Maria Genander; Michael M Halford; Nan-Jie Xu; Malin Eriksson; Zuoren Yu; Zhaozhu Qiu; Anna Martling; Gedas Greicius; Sonal Thakar; Timothy Catchpole; Michael J Chumley; Sofia Zdunek; Chenguang Wang; Torbjörn Holm; Stephen P Goff; Sven Pettersson; Richard G Pestell; Mark Henkemeyer; Jonas Frisén
Journal:  Cell       Date:  2009-11-13       Impact factor: 41.582

9.  Notch signaling promotes the generation of EphrinB1-positive intestinal epithelial cells.

Authors:  Bon-Kyoung Koo; Hyoung-Soo Lim; Hee Jin Chang; Mi-Jeong Yoon; Yongwook Choi; Myung-Phil Kong; Cheol-Hee Kim; Jin-Man Kim; Jae-Gahb Park; Young-Yun Kong
Journal:  Gastroenterology       Date:  2009-03-28       Impact factor: 22.682

10.  Dynamic signaling network for the specification of embryonic pancreas and liver progenitors.

Authors:  Ewa Wandzioch; Kenneth S Zaret
Journal:  Science       Date:  2009-06-26       Impact factor: 47.728

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  16 in total

Review 1.  DNA Methylation Dynamics During Differentiation, Proliferation, and Tumorigenesis in the Intestinal Tract.

Authors:  Can-Ze Huang; Tao Yu; Qi-Kui Chen
Journal:  Stem Cells Dev       Date:  2015-10-20       Impact factor: 3.272

2.  Multi-dimensional Transcriptional Remodeling by Physiological Insulin In Vivo.

Authors:  Thiago M Batista; Ruben Garcia-Martin; Weikang Cai; Masahiro Konishi; Brian T O'Neill; Masaji Sakaguchi; Jong Hun Kim; Dae Young Jung; Jason K Kim; C Ronald Kahn
Journal:  Cell Rep       Date:  2019-03-19       Impact factor: 9.423

Review 3.  Roles for Hedgehog signaling in adult organ homeostasis and repair.

Authors:  Ralitsa Petrova; Alexandra L Joyner
Journal:  Development       Date:  2014-09       Impact factor: 6.868

4.  Postnatal epigenetic regulation of intestinal stem cells requires DNA methylation and is guided by the microbiome.

Authors:  Da-Hai Yu; Manasi Gadkari; Quan Zhou; Shiyan Yu; Nan Gao; Yongtao Guan; Deborah Schady; Tony N Roshan; Miao-Hsueh Chen; Eleonora Laritsky; Zhongqi Ge; Hui Wang; Rui Chen; Caroline Westwater; Lynn Bry; Robert A Waterland; Chelsea Moriarty; Cindy Hwang; Alton G Swennes; Sean R Moore; Lanlan Shen
Journal:  Genome Biol       Date:  2015-09-30       Impact factor: 13.583

5.  DNA methylation is required for the control of stem cell differentiation in the small intestine.

Authors:  Karyn L Sheaffer; Rinho Kim; Reina Aoki; Ellen N Elliott; Jonathan Schug; Lukas Burger; Dirk Schübeler; Klaus H Kaestner
Journal:  Genes Dev       Date:  2014-03-15       Impact factor: 11.361

6.  Hepatic circadian clock oscillators and nuclear receptors integrate microbiome-derived signals.

Authors:  Alexandra Montagner; Agata Korecka; Arnaud Polizzi; Yannick Lippi; Yuna Blum; Cécile Canlet; Marie Tremblay-Franco; Amandine Gautier-Stein; Rémy Burcelin; Yi-Chun Yen; Hyunsoo Shawn Je; Maha Al-Asmakh; Al-Asmakh Maha; Gilles Mithieux; Velmurugesan Arulampalam; Sandrine Lagarrigue; Hervé Guillou; Sven Pettersson; Walter Wahli
Journal:  Sci Rep       Date:  2016-02-16       Impact factor: 4.379

7.  Selective and reversible suppression of intestinal stem cell differentiation by pharmacological inhibition of BET bromodomains.

Authors:  Akifumi Nakagawa; Curtis E Adams; Yinshi Huang; Sulaiman R Hamarneh; Wei Liu; Kate N Von Alt; Mari Mino-Kenudson; Richard A Hodin; Keith D Lillemoe; Carlos Fernández-Del Castillo; Andrew L Warshaw; Andrew S Liss
Journal:  Sci Rep       Date:  2016-02-09       Impact factor: 4.379

8.  Cloning and variation of ground state intestinal stem cells.

Authors:  Xia Wang; Yusuke Yamamoto; Lane H Wilson; Ting Zhang; Brooke E Howitt; Melissa A Farrow; Florian Kern; Gang Ning; Yue Hong; Chiea Chuen Khor; Benoit Chevalier; Denis Bertrand; Lingyan Wu; Niranjan Nagarajan; Francisco A Sylvester; Jeffrey S Hyams; Thomas Devers; Roderick Bronson; D Borden Lacy; Khek Yu Ho; Christopher P Crum; Frank McKeon; Wa Xian
Journal:  Nature       Date:  2015-06-03       Impact factor: 49.962

9.  Dissecting engineered cell types and enhancing cell fate conversion via CellNet.

Authors:  Samantha A Morris; Patrick Cahan; Hu Li; Anna M Zhao; Adrianna K San Roman; Ramesh A Shivdasani; James J Collins; George Q Daley
Journal:  Cell       Date:  2014-08-14       Impact factor: 41.582

10.  Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells.

Authors:  Colin R Lickwar; J Gray Camp; Matthew Weiser; Jordan L Cocchiaro; David M Kingsley; Terrence S Furey; Shehzad Z Sheikh; John F Rawls
Journal:  PLoS Biol       Date:  2017-08-29       Impact factor: 8.029

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