Literature DB >> 22949202

Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of succinyl-diaminopimelate desuccinylase (Rv1202, DapE) from Mycobacterium tuberculosis.

Linda Reinhard1, Jochen Mueller-Dieckmann, Manfred S Weiss.   

Abstract

Succinyl-diaminopimelate desuccinylase from Mycobacterium tuberculosis (DapE, Rv1202) has been cloned, heterologously expressed in Escherichia coli and purified using standard chromatographic techniques. Diffraction-quality crystals were obtained at acidic pH from ammonium sulfate and PEG and diffraction data were collected from two crystals to resolutions of 2.40 and 2.58 Å, respectively. The crystals belonged to the monoclinic space group P2(1), with unit-cell parameters a = 79.7, b = 76.0, c = 82.9 Å, β = 119°. The most probable content of the asymmetric unit was two molecules of DapE, which would correspond to a solvent content of 56%. Both examined crystals turned out to be pseudo-merohedrally twinned, with twin operator -h, -k, h + l and twin fractions of approximately 0.46 and 0.16, respectively.

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Year:  2012        PMID: 22949202      PMCID: PMC3433205          DOI: 10.1107/S174430911203062X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  41 in total

1.  SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model.

Authors:  A A Vaguine; J Richelle; S J Wodak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

2.  N-Succinyl-L-2,6-diaminopimelic acid deacylase.

Authors:  S H KINDLER; C GILVARG
Journal:  J Biol Chem       Date:  1960-12       Impact factor: 5.157

3.  Biosynthesis of diaminopimelate, the precursor of lysine and a component of peptidoglycan, is an essential function of Mycobacterium smegmatis.

Authors:  M S Pavelka; W R Jacobs
Journal:  J Bacteriol       Date:  1996-11       Impact factor: 3.490

4.  Structural analysis of a set of proteins resulting from a bacterial genomics project.

Authors:  J Badger; J M Sauder; J M Adams; S Antonysamy; K Bain; M G Bergseid; S G Buchanan; M D Buchanan; Y Batiyenko; J A Christopher; S Emtage; A Eroshkina; I Feil; E B Furlong; K S Gajiwala; X Gao; D He; J Hendle; A Huber; K Hoda; P Kearins; C Kissinger; B Laubert; H A Lewis; J Lin; K Loomis; D Lorimer; G Louie; M Maletic; C D Marsh; I Miller; J Molinari; H J Muller-Dieckmann; J M Newman; B W Noland; B Pagarigan; F Park; T S Peat; K W Post; S Radojicic; A Ramos; R Romero; M E Rutter; W E Sanderson; K D Schwinn; J Tresser; J Winhoven; T A Wright; L Wu; J Xu; T J R Harris
Journal:  Proteins       Date:  2005-09-01

5.  Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of DapB (Rv2773c) from Mycobacterium tuberculosis.

Authors:  Georgia Kefala; Robert Janowski; Santosh Panjikar; Christoph Mueller-Dieckmann; Manfred S Weiss
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-06-30

6.  Simple statistics for intensity data from twinned specimens.

Authors:  T O Yeates
Journal:  Acta Crystallogr A       Date:  1988-03-01       Impact factor: 2.290

Review 7.  Amino acid biosynthesis and its regulation.

Authors:  H E Umbarger
Journal:  Annu Rev Biochem       Date:  1978       Impact factor: 23.643

8.  Structures of ternary complexes of aspartate-semialdehyde dehydrogenase (Rv3708c) from Mycobacterium tuberculosis H37Rv.

Authors:  Rajan Vyas; Rupinder Tewari; Manfred S Weiss; Subramanian Karthikeyan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-05-17

9.  Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.

Authors:  S T Cole; R Brosch; J Parkhill; T Garnier; C Churcher; D Harris; S V Gordon; K Eiglmeier; S Gas; C E Barry; F Tekaia; K Badcock; D Basham; D Brown; T Chillingworth; R Connor; R Davies; K Devlin; T Feltwell; S Gentles; N Hamlin; S Holroyd; T Hornsby; K Jagels; A Krogh; J McLean; S Moule; L Murphy; K Oliver; J Osborne; M A Quail; M A Rajandream; J Rogers; S Rutter; K Seeger; J Skelton; R Squares; S Squares; J E Sulston; K Taylor; S Whitehead; B G Barrell
Journal:  Nature       Date:  1998-06-11       Impact factor: 49.962

Review 10.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14
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  1 in total

1.  Reconstruction of diaminopimelic acid biosynthesis allows characterisation of Mycobacterium tuberculosis N-succinyl-L,L-diaminopimelic acid desuccinylase.

Authors:  Veeraraghavan Usha; Adrian J Lloyd; David I Roper; Christopher G Dowson; Guennadi Kozlov; Kalle Gehring; Smita Chauhan; Hasan T Imam; Claudia A Blindauer; Gurdyal S Besra
Journal:  Sci Rep       Date:  2016-03-15       Impact factor: 4.379

  1 in total

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