Literature DB >> 22947061

Superresolution microscopy for microbiology.

Carla Coltharp1, Jie Xiao.   

Abstract

This review provides a practical introduction to superresolution microscopy from the perspective of microbiological research. Because of the small sizes of bacterial cells, superresolution methods are particularly powerful and suitable for revealing details of cellular structures that are not resolvable under conventional fluorescence light microscopy. Here we describe the methodological concepts behind three major categories of superresolution light microscopy: photoactivated localization microscopy (PALM) and stochastic optical reconstruction microscopy (STORM), structured illumination microscopy (SIM) and stimulated emission-depletion (STED) microscopy. We then present recent applications of each of these techniques to microbial systems, which have revealed novel conformations of cellular structures and described new properties of in vivo protein function and interactions. Finally, we discuss the unique issues related to implementing each of these superresolution techniques with bacterial specimens and suggest avenues for future development. The goal of this review is to provide the necessary technical background for interested microbiologists to choose the appropriate superresolution method for their biological systems, and to introduce the practical considerations required for designing and analysing superresolution imaging experiments.
© 2012 Blackwell Publishing Ltd.

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Year:  2012        PMID: 22947061      PMCID: PMC3894611          DOI: 10.1111/cmi.12024

Source DB:  PubMed          Journal:  Cell Microbiol        ISSN: 1462-5814            Impact factor:   3.715


  67 in total

1.  Correlative 3D superresolution fluorescence and electron microscopy reveal the relationship of mitochondrial nucleoids to membranes.

Authors:  Benjamin G Kopek; Gleb Shtengel; C Shan Xu; David A Clayton; Harald F Hess
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

Review 2.  Single-molecule and superresolution imaging in live bacteria cells.

Authors:  Julie S Biteen; W E Moerner
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-03       Impact factor: 10.005

3.  Fluorescence microscopy beyond the diffraction limit.

Authors:  Mike Heilemann
Journal:  J Biotechnol       Date:  2010-03-27       Impact factor: 3.307

4.  Super-resolution imaging of the bacterial cytokinetic protein FtsZ.

Authors:  Phoebe C Jennings; Guy C Cox; Leigh G Monahan; Elizabeth J Harry
Journal:  Micron       Date:  2010-09-15       Impact factor: 2.251

5.  Video-rate far-field optical nanoscopy dissects synaptic vesicle movement.

Authors:  Volker Westphal; Silvio O Rizzoli; Marcel A Lauterbach; Dirk Kamin; Reinhard Jahn; Stefan W Hell
Journal:  Science       Date:  2008-02-21       Impact factor: 47.728

6.  Microscopy and its focal switch.

Authors:  Stefan W Hell
Journal:  Nat Methods       Date:  2009-01       Impact factor: 28.547

7.  Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics.

Authors:  Hari Shroff; Catherine G Galbraith; James A Galbraith; Eric Betzig
Journal:  Nat Methods       Date:  2008-04-13       Impact factor: 28.547

8.  Fluorescence nanoscopy by ground-state depletion and single-molecule return.

Authors:  Jonas Fölling; Mariano Bossi; Hannes Bock; Rebecca Medda; Christian A Wurm; Birka Hein; Stefan Jakobs; Christian Eggeling; Stefan W Hell
Journal:  Nat Methods       Date:  2008-09-15       Impact factor: 28.547

9.  In vivo structure of the E. coli FtsZ-ring revealed by photoactivated localization microscopy (PALM).

Authors:  Guo Fu; Tao Huang; Jackson Buss; Carla Coltharp; Zach Hensel; Jie Xiao
Journal:  PLoS One       Date:  2010-09-13       Impact factor: 3.240

10.  Effects of poly(L-lysine) substrates on attached Escherichia coli bacteria.

Authors:  Keegan Colville; Nicolas Tompkins; Andrew D Rutenberg; Manfred H Jericho
Journal:  Langmuir       Date:  2010-02-16       Impact factor: 3.882

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  30 in total

Review 1.  In the beginning, Escherichia coli assembled the proto-ring: an initial phase of division.

Authors:  Ana Isabel Rico; Marcin Krupka; Miguel Vicente
Journal:  J Biol Chem       Date:  2013-06-05       Impact factor: 5.157

Review 2.  Three-Dimensional Localization of Single Molecules for Super-Resolution Imaging and Single-Particle Tracking.

Authors:  Lexy von Diezmann; Yoav Shechtman; W E Moerner
Journal:  Chem Rev       Date:  2017-02-02       Impact factor: 60.622

3.  Visualization and characterization of individual type III protein secretion machines in live bacteria.

Authors:  Yongdeng Zhang; María Lara-Tejero; Jörg Bewersdorf; Jorge E Galán
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-22       Impact factor: 11.205

4.  The temperature gradient-forming device, an accessory unit for normal light microscopes to study the biology of hyperthermophilic microorganisms.

Authors:  Maximilian Mora; Annett Bellack; Matthias Ugele; Johann Hopf; Reinhard Wirth
Journal:  Appl Environ Microbiol       Date:  2014-05-23       Impact factor: 4.792

Review 5.  Bacterial Vivisection: How Fluorescence-Based Imaging Techniques Shed a Light on the Inner Workings of Bacteria.

Authors:  Alexander Cambré; Abram Aertsen
Journal:  Microbiol Mol Biol Rev       Date:  2020-10-28       Impact factor: 11.056

6.  Super-resolution Imaging of Live Bacteria Cells Using a Genetically Directed, Highly Photostable Fluoromodule.

Authors:  Saumya Saurabh; Adam M Perez; Colin J Comerci; Lucy Shapiro; W E Moerner
Journal:  J Am Chem Soc       Date:  2016-08-10       Impact factor: 15.419

Review 7.  Exploring bacterial cell biology with single-molecule tracking and super-resolution imaging.

Authors:  Andreas Gahlmann; W E Moerner
Journal:  Nat Rev Microbiol       Date:  2014-01       Impact factor: 60.633

Review 8.  Imaging Bacterial Cell Wall Biosynthesis.

Authors:  Atanas D Radkov; Yen-Pang Hsu; Garrett Booher; Michael S VanNieuwenhze
Journal:  Annu Rev Biochem       Date:  2018-03-29       Impact factor: 23.643

9.  Facile method to stain the bacterial cell surface for super-resolution fluorescence microscopy.

Authors:  Ian L Gunsolus; Dehong Hu; Cosmin Mihai; Samuel E Lohse; Chang-soo Lee; Marco D Torelli; Robert J Hamers; Catherine J Murhpy; Galya Orr; Christy L Haynes
Journal:  Analyst       Date:  2014-05-09       Impact factor: 4.616

10.  VIPERnano: Improved Live Cell Intracellular Protein Tracking.

Authors:  Erin Morgan; Julia Doh; Kimberly Beatty; Norbert Reich
Journal:  ACS Appl Mater Interfaces       Date:  2019-10-01       Impact factor: 9.229

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