Literature DB >> 22940235

A phylogenetic comparative method for studying multivariate adaptation.

Krzysztof Bartoszek1, Jason Pienaar, Petter Mostad, Staffan Andersson, Thomas F Hansen.   

Abstract

Phylogenetic comparative methods have been limited in the way they model adaptation. Although some progress has been made, there are still no methods that can fully account for coadaptation between traits. Based on Ornstein-Uhlenbeck (OU) models of adaptive evolution, we present a method, with R implementation, in which multiple traits evolve both in response to each other and, as in previous OU models, to fixed or randomly evolving predictor variables. We present the interpretation of the model parameters in terms of evolutionary and optimal regressions enabling the study of allometric and adaptive relationships between traits. To illustrate the method we reanalyze a data set of antler and body-size evolution in deer (Cervidae).
Copyright © 2012 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2012        PMID: 22940235     DOI: 10.1016/j.jtbi.2012.08.005

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  18 in total

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2.  Historical Biogeography Using Species Geographical Ranges.

Authors:  Ignacio Quintero; Petr Keil; Walter Jetz; Forrest W Crawford
Journal:  Syst Biol       Date:  2015-08-08       Impact factor: 15.683

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4.  A Relaxed Directional Random Walk Model for Phylogenetic Trait Evolution.

Authors:  Mandev S Gill; Lam Si Tung Ho; Guy Baele; Philippe Lemey; Marc A Suchard
Journal:  Syst Biol       Date:  2017-05-01       Impact factor: 15.683

5.  Phase transition on the convergence rate of parameter estimation under an Ornstein-Uhlenbeck diffusion on a tree.

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Journal:  J Math Biol       Date:  2016-05-30       Impact factor: 2.259

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Authors:  Diogo Melo; Arthur Porto; James M Cheverud; Gabriel Marroig
Journal:  Annu Rev Ecol Evol Syst       Date:  2016-09-07       Impact factor: 13.915

7.  An interspecific assessment of Bergmann's rule in 22 mammalian families.

Authors:  Jostein Gohli; Kjetil L Voje
Journal:  BMC Evol Biol       Date:  2016-10-19       Impact factor: 3.260

8.  Evolution of Hemoglobin Genes in Codfishes Influenced by Ocean Depth.

Authors:  Helle Tessand Baalsrud; Kjetil Lysne Voje; Ole Kristian Tørresen; Monica Hongrø Solbakken; Michael Matschiner; Martin Malmstrøm; Reinhold Hanel; Walter Salzburger; Kjetill S Jakobsen; Sissel Jentoft
Journal:  Sci Rep       Date:  2017-08-11       Impact factor: 4.379

9.  Multi-omic analysis of signalling factors in inflammatory comorbidities.

Authors:  Hui Xiao; Krzysztof Bartoszek; Pietro Lio'
Journal:  BMC Bioinformatics       Date:  2018-11-30       Impact factor: 3.169

10.  The ancestral flower of angiosperms and its early diversification.

Authors:  Hervé Sauquet; Maria von Balthazar; Susana Magallón; James A Doyle; Peter K Endress; Emily J Bailes; Erica Barroso de Morais; Kester Bull-Hereñu; Laetitia Carrive; Marion Chartier; Guillaume Chomicki; Mario Coiro; Raphaël Cornette; Juliana H L El Ottra; Cyril Epicoco; Charles S P Foster; Florian Jabbour; Agathe Haevermans; Thomas Haevermans; Rebeca Hernández; Stefan A Little; Stefan Löfstrand; Javier A Luna; Julien Massoni; Sophie Nadot; Susanne Pamperl; Charlotte Prieu; Elisabeth Reyes; Patrícia Dos Santos; Kristel M Schoonderwoerd; Susanne Sontag; Anaëlle Soulebeau; Yannick Staedler; Georg F Tschan; Amy Wing-Sze Leung; Jürg Schönenberger
Journal:  Nat Commun       Date:  2017-08-01       Impact factor: 14.919

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