Literature DB >> 22938215

Particle-swarm structure prediction on clusters.

Jian Lv1, Yanchao Wang, Li Zhu, Yanming Ma.   

Abstract

We have developed an efficient method for cluster structure prediction based on the generalization of particle swarm optimization (PSO). A local version of PSO algorithm was implemented to utilize a fine exploration of potential energy surface for a given non-periodic system. We have specifically devised a technique of so-called bond characterization matrix (BCM) to allow the proper measure on the structural similarity. The BCM technique was then employed to eliminate similar structures and define the desirable local search spaces. We find that the introduction of point group symmetries into generation of cluster structures enables structural diversity and apparently avoids the generation of liquid-like (or disordered) clusters for large systems, thus considerably improving the structural search efficiency. We have incorporated Metropolis criterion into our method to further enhance the structural evolution towards low-energy regimes of potential energy surfaces. Our method has been extensively benchmarked on Lennard-Jones clusters with different sizes up to 150 atoms and applied into prediction of new structures of medium-sized Li(n) (n = 20, 40, 58) clusters. High search efficiency was achieved, demonstrating the reliability of the current methodology and its promise as a major method on cluster structure prediction.

Entities:  

Year:  2012        PMID: 22938215     DOI: 10.1063/1.4746757

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  30 in total

1.  Topology-Based Machine Learning Strategy for Cluster Structure Prediction.

Authors:  Xin Chen; Dong Chen; Mouyi Weng; Yi Jiang; Guo-Wei Wei; Feng Pan
Journal:  J Phys Chem Lett       Date:  2020-05-21       Impact factor: 6.475

Review 2.  Computational methods in drug discovery.

Authors:  Gregory Sliwoski; Sandeepkumar Kothiwale; Jens Meiler; Edward W Lowe
Journal:  Pharmacol Rev       Date:  2013-12-31       Impact factor: 25.468

3.  LiB13: A New Member of Tetrahedral-Typed B13 Ligand Half-Surround Cluster.

Authors:  Hongxiao Shi; Xiaoyu Kuang; Cheng Lu
Journal:  Sci Rep       Date:  2020-02-03       Impact factor: 4.379

4.  RgnBe3B3+: theoretical investigation of Be3B3+ and its rare gas capability.

Authors:  Zhuo Zhe Li; Mei Wen; An Yong Li
Journal:  J Mol Model       Date:  2019-11-18       Impact factor: 1.810

5.  A triatomic carbon and derived pentacarbides with superstrong mechanical properties.

Authors:  Bingcheng Luo; Longwen Wu; Zili Zhang; Guowu Li; Enke Tian
Journal:  iScience       Date:  2022-07-03

6.  Rapid 3D roll-up of gas-phase planar gold clusters and affinity and alienation for Mg and Ge: A theoretical study of MgGeAun (n=1-12) clusters.

Authors:  Ben-Chao Zhu; Ping-Ji Deng; Jia Guo; Wen-Bin Kang; Lei Bao
Journal:  iScience       Date:  2022-09-26

7.  Hypervalent Iodine with Linear Chain at High Pressure.

Authors:  Shubo Wei; Jianyun Wang; Shiyu Deng; Shoutao Zhang; Quan Li
Journal:  Sci Rep       Date:  2015-09-24       Impact factor: 4.379

8.  Probing the structural evolution of ruthenium doped germanium clusters: Photoelectron spectroscopy and density functional theory calculations.

Authors:  Yuanyuan Jin; Shengjie Lu; Andreas Hermann; Xiaoyu Kuang; Chuanzhao Zhang; Cheng Lu; Hongguang Xu; Weijun Zheng
Journal:  Sci Rep       Date:  2016-07-21       Impact factor: 4.379

9.  Insights into the geometries, electronic and magnetic properties of neutral and charged palladium clusters.

Authors:  Xiaodong Xing; Andreas Hermann; Xiaoyu Kuang; Meng Ju; Cheng Lu; Yuanyuan Jin; Xinxin Xia; George Maroulis
Journal:  Sci Rep       Date:  2016-01-22       Impact factor: 4.379

10.  Understanding the structural transformation, stability of medium-sized neutral and charged silicon clusters.

Authors:  Li Ping Ding; Fang Hui Zhang; Yong Sheng Zhu; Cheng Lu; Xiao Yu Kuang; Jian Lv; Peng Shao
Journal:  Sci Rep       Date:  2015-11-03       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.