Literature DB >> 32320253

Topology-Based Machine Learning Strategy for Cluster Structure Prediction.

Xin Chen1, Dong Chen1, Mouyi Weng1, Yi Jiang1, Guo-Wei Wei2, Feng Pan1.   

Abstract

In cluster physics, the determination of the ground-state structure of medium-sized and large-sized clusters is a challenge due to the number of local minimal values on the potential energy surface growing exponentially with cluster size. Although machine learning approaches have had much success in materials sciences, their applications in clusters are often hindered by the geometric complexity clusters. Persistent homology provides a new topological strategy to simplify geometric complexity while retaining important chemical and physical information without having to "downgrade" the original data. We further propose persistent pairwise independence (PPI) to enhance the predictive power of persistent homology. We construct topology-based machine learning models to reveal hidden structure-energy relationships in lithium (Li) clusters. We integrate the topology-based machine learning models, a particle swarm optimization algorithm, and density functional theory calculations to accelerate the search of the globally stable structure of clusters.

Entities:  

Year:  2020        PMID: 32320253      PMCID: PMC7351018          DOI: 10.1021/acs.jpclett.0c00974

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  32 in total

1.  Minima hopping: an efficient search method for the global minimum of the potential energy surface of complex molecular systems.

Authors:  Stefan Goedecker
Journal:  J Chem Phys       Date:  2004-06-01       Impact factor: 3.488

2.  Crystal structure prediction using ab initio evolutionary techniques: principles and applications.

Authors:  Artem R Oganov; Colin W Glass
Journal:  J Chem Phys       Date:  2006-06-28       Impact factor: 3.488

3.  Ab initio molecular dynamics of hydrogen dissociation on metal surfaces using neural networks and novelty sampling.

Authors:  Jeffery Ludwig; Dionisios G Vlachos
Journal:  J Chem Phys       Date:  2007-10-21       Impact factor: 3.488

4.  Optimization by simulated annealing.

Authors:  S Kirkpatrick; C D Gelatt; M P Vecchi
Journal:  Science       Date:  1983-05-13       Impact factor: 47.728

5.  Atom-centered symmetry functions for constructing high-dimensional neural network potentials.

Authors:  Jörg Behler
Journal:  J Chem Phys       Date:  2011-02-21       Impact factor: 3.488

Review 6.  Neural network potential-energy surfaces in chemistry: a tool for large-scale simulations.

Authors:  Jörg Behler
Journal:  Phys Chem Chem Phys       Date:  2011-09-13       Impact factor: 3.676

7.  Convolutional Embedding of Attributed Molecular Graphs for Physical Property Prediction.

Authors:  Connor W Coley; Regina Barzilay; William H Green; Tommi S Jaakkola; Klavs F Jensen
Journal:  J Chem Inf Model       Date:  2017-07-25       Impact factor: 4.956

8.  Topology-based kernels with application to inference problems in Alzheimer's disease.

Authors:  Deepti Pachauri; Chris Hinrichs; Moo K Chung; Sterling C Johnson; Vikas Singh
Journal:  IEEE Trans Med Imaging       Date:  2011-04-29       Impact factor: 10.048

9.  Machine learning bandgaps of double perovskites.

Authors:  G Pilania; A Mannodi-Kanakkithodi; B P Uberuaga; R Ramprasad; J E Gubernatis; T Lookman
Journal:  Sci Rep       Date:  2016-01-19       Impact factor: 4.379

10.  A Statistical Learning Framework for Materials Science: Application to Elastic Moduli of k-nary Inorganic Polycrystalline Compounds.

Authors:  Maarten de Jong; Wei Chen; Randy Notestine; Kristin Persson; Gerbrand Ceder; Anubhav Jain; Mark Asta; Anthony Gamst
Journal:  Sci Rep       Date:  2016-10-03       Impact factor: 4.379

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