Literature DB >> 22933753

Genome sequence of n-alkane-degrading Hydrocarboniphaga effusa strain AP103T (ATCC BAA-332T).

Hung-Kuang Chang1, Gerben J Zylstra, Jong-Chan Chae.   

Abstract

Hydrocarboniphaga effusa strain AP103(T) (ATCC BAA-332(T)) is a member of the Gammaproteobacteria utilizing n-alkanes as the sole source of carbon and energy. Here we report the draft genome sequence of AP103(T), which consists of 5,193,926 bp with a G + C content of 65.18%.

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Year:  2012        PMID： 22933753      PMCID： PMC3430359          DOI： 10.1128/JB.01017-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  7 in total

Review 1.  Expanding the alkane oxygenase toolbox: new enzymes and applications.

Authors:  Jan B van Beilen; Enrico G Funhoff
Journal:  Curr Opin Biotechnol       Date:  2005-06       Impact factor: 9.740

2.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

3.  The COG database: new developments in phylogenetic classification of proteins from complete genomes.

Authors:  R L Tatusov; D A Natale; I V Garkavtsev; T A Tatusova; U T Shankavaram; B S Rao; B Kiryutin; M Y Galperin; N D Fedorova; E V Koonin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

4.  Profiling mechanisms of alkane hydroxylase activity in vivo using the diagnostic substrate norcarane.

Authors:  Elena A Rozhkova-Novosad; Jong-Chan Chae; Gerben J Zylstra; Erin M Bertrand; Marselle Alexander-Ozinskas; Dayi Deng; Luke A Moe; Jan B van Beilen; Michael Danahy; John T Groves; Rachel N Austin
Journal:  Chem Biol       Date:  2007-02

5.  Hydrocarboniphaga effusa gen. nov., sp. nov., a novel member of the gamma-Proteobacteria active in alkane and aromatic hydrocarbon degradation.

Authors:  Norberto J Palleroni; Ava M Port; Hung-Kuang Chang; Gerben J Zylstra
Journal:  Int J Syst Evol Microbiol       Date:  2004-07       Impact factor: 2.747

6.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

7.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  7 in total

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