Literature DB >> 22926223

Beyond knockouts: cre resources for conditional mutagenesis.

Stephen A Murray1, Janan T Eppig, Damian Smedley, Elizabeth M Simpson, Nadia Rosenthal.   

Abstract

With the effort of the International Phenotyping Consortium to produce thousands of strains with conditional potential gathering steam, there is growing recognition that it must be supported by a rich toolbox of cre driver strains. The approaches to build cre strains have evolved in both sophistication and reliability, replacing first-generation strains with tools that can target individual cell populations with incredible precision and specificity. The modest set of cre drivers generated by individual labs over the past 15+ years is now growing rapidly, thanks to a number of large-scale projects to produce new cre strains for the community. The power of this growing resource, however, depends upon the proper deep characterization of strain function, as even the best designed strain can display a variety of undesirable features that must be considered in experimental design. This must be coupled with the parallel development of informatics tools to provide functional data to the user and facilitated access to the strains through public repositories. We discuss the current progress on all of these fronts and the challenges that remain to ensure the scientific community can capitalize on the tremendous number of mouse resources at their disposal.

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Year:  2012        PMID: 22926223      PMCID: PMC3655717          DOI: 10.1007/s00335-012-9430-2

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  74 in total

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Journal:  Neuron       Date:  2011-09-21       Impact factor: 17.173

2.  Cre-mediated recombination can induce apoptosis in vivo by activating the p53 DNA damage-induced pathway.

Authors:  Jianjian Zhu; Minh-Thanh Nguyen; Eiichiro Nakamura; Junming Yang; Susan Mackem
Journal:  Genesis       Date:  2012-01-06       Impact factor: 2.487

3.  The FaceBase Consortium: a comprehensive program to facilitate craniofacial research.

Authors:  Harry Hochheiser; Bruce J Aronow; Kristin Artinger; Terri H Beaty; James F Brinkley; Yang Chai; David Clouthier; Michael L Cunningham; Michael Dixon; Leah Rae Donahue; Scott E Fraser; Benedikt Hallgrimsson; Junichi Iwata; Ophir Klein; Mary L Marazita; Jeffrey C Murray; Stephen Murray; Fernando Pardo-Manuel de Villena; John Postlethwait; Steven Potter; Linda Shapiro; Richard Spritz; Axel Visel; Seth M Weinberg; Paul A Trainor
Journal:  Dev Biol       Date:  2011-03-31       Impact factor: 3.582

4.  Site-specific integrase-mediated transgenesis in mice via pronuclear injection.

Authors:  Bosiljka Tasic; Simon Hippenmeyer; Charlene Wang; Matthew Gamboa; Hui Zong; Yanru Chen-Tsai; Liqun Luo
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-04       Impact factor: 11.205

5.  Next generation tools for high-throughput promoter and expression analysis employing single-copy knock-ins at the Hprt1 locus.

Authors:  G S Yang; K G Banks; R J Bonaguro; G Wilson; L Dreolini; C N de Leeuw; L Liu; D J Swanson; D Goldowitz; R A Holt; E M Simpson
Journal:  Genomics       Date:  2008-12-03       Impact factor: 5.736

6.  High cleavage efficiency of a 2A peptide derived from porcine teschovirus-1 in human cell lines, zebrafish and mice.

Authors:  Jin Hee Kim; Sang-Rok Lee; Li-Hua Li; Hye-Jeong Park; Jeong-Hoh Park; Kwang Youl Lee; Myeong-Kyu Kim; Boo Ahn Shin; Seok-Yong Choi
Journal:  PLoS One       Date:  2011-04-29       Impact factor: 3.240

7.  A modified RMCE-compatible Rosa26 locus for the expression of transgenes from exogenous promoters.

Authors:  Jan S Tchorz; Thomas Suply; Iwona Ksiazek; Claudio Giachino; Dimitri Cloëtta; Claus-Peter Danzer; Thierry Doll; Andrea Isken; Marianne Lemaistre; Verdon Taylor; Bernhard Bettler; Bernd Kinzel; Matthias Mueller
Journal:  PLoS One       Date:  2012-01-13       Impact factor: 3.240

8.  The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse.

Authors:  Janan T Eppig; Judith A Blake; Carol J Bult; James A Kadin; Joel E Richardson
Journal:  Nucleic Acids Res       Date:  2011-11-10       Impact factor: 16.971

9.  A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing.

Authors:  Linda Madisen; Tianyi Mao; Henner Koch; Jia-min Zhuo; Antal Berenyi; Shigeyoshi Fujisawa; Yun-Wei A Hsu; Alfredo J Garcia; Xuan Gu; Sebastien Zanella; Jolene Kidney; Hong Gu; Yimei Mao; Bryan M Hooks; Edward S Boyden; György Buzsáki; Jan Marino Ramirez; Allan R Jones; Karel Svoboda; Xue Han; Eric E Turner; Hongkui Zeng
Journal:  Nat Neurosci       Date:  2012-03-25       Impact factor: 24.884

10.  BioMart--biological queries made easy.

Authors:  Damian Smedley; Syed Haider; Benoit Ballester; Richard Holland; Darin London; Gudmundur Thorisson; Arek Kasprzyk
Journal:  BMC Genomics       Date:  2009-01-14       Impact factor: 3.969

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  29 in total

1.  Mouse models of PI(3,5)P2 deficiency with impaired lysosome function.

Authors:  Guy M Lenk; Miriam H Meisler
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

2.  Comparative analysis of the efficiency and specificity of myeloid-Cre deleting strains using ROSA-EYFP reporter mice.

Authors:  Clare L Abram; Gray L Roberge; Yongmei Hu; Clifford A Lowell
Journal:  J Immunol Methods       Date:  2014-05-22       Impact factor: 2.303

3.  Passenger Mutations Confound Interpretation of All Genetically Modified Congenic Mice.

Authors:  Tom Vanden Berghe; Paco Hulpiau; Liesbet Martens; Roosmarijn E Vandenbroucke; Elien Van Wonterghem; Seth W Perry; Inge Bruggeman; Tatyana Divert; Sze Men Choi; Marnik Vuylsteke; Valery I Shestopalov; Claude Libert; Peter Vandenabeele
Journal:  Immunity       Date:  2015-07-07       Impact factor: 31.745

4.  Development and characterization of a mouse model for Acad9 deficiency.

Authors:  Andrew Sinsheimer; Al-Walid Mohsen; Kailyn Bloom; Anuradha Karunanidhi; Sivakama Bharathi; Yijen L Wu; Manuel Schiff; Yudong Wang; Eric S Goetzman; Lina Ghaloul-Gonzalez; Jerry Vockley
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Review 5.  Tracking cells in their native habitat: lineage tracing in epithelial neoplasia.

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Journal:  Nat Rev Cancer       Date:  2013-02-07       Impact factor: 60.716

Review 6.  Overview of genetic tools and techniques to study Notch signaling in mice.

Authors:  Thomas Gridley; Andrew K Groves
Journal:  Methods Mol Biol       Date:  2014

7.  Evaluating different DNA binding domains to modulate L1 ORF2p-driven site-specific retrotransposition events in human cells.

Authors:  Catherine M Ade; Rebecca S Derbes; Bradley J Wagstaff; Sara B Linker; Travis B White; Dawn Deharo; Victoria P Belancio; Zoltán Ivics; Astrid M Roy-Engel
Journal:  Gene       Date:  2017-11-14       Impact factor: 3.688

8.  Optimizing Nervous System-Specific Gene Targeting with Cre Driver Lines: Prevalence of Germline Recombination and Influencing Factors.

Authors:  Lin Luo; Mateusz C Ambrozkiewicz; Fritz Benseler; Cui Chen; Emilie Dumontier; Susanne Falkner; Elisabetta Furlanis; Andrea M Gomez; Naosuke Hoshina; Wei-Hsiang Huang; Mary Anne Hutchison; Yu Itoh-Maruoka; Laura A Lavery; Wei Li; Tomohiko Maruo; Junko Motohashi; Emily Ling-Lin Pai; Kenneth A Pelkey; Ariane Pereira; Thomas Philips; Jennifer L Sinclair; Jeff A Stogsdill; Lisa Traunmüller; Jiexin Wang; Joke Wortel; Wenjia You; Nashat Abumaria; Kevin T Beier; Nils Brose; Harold A Burgess; Constance L Cepko; Jean-François Cloutier; Cagla Eroglu; Sandra Goebbels; Pascal S Kaeser; Jeremy N Kay; Wei Lu; Liqun Luo; Kenji Mandai; Chris J McBain; Klaus-Armin Nave; Marco A M Prado; Vania F Prado; Jeffrey Rothstein; John L R Rubenstein; Gesine Saher; Kenji Sakimura; Joshua R Sanes; Peter Scheiffele; Yoshimi Takai; Hisashi Umemori; Matthijs Verhage; Michisuke Yuzaki; Huda Yahya Zoghbi; Hiroshi Kawabe; Ann Marie Craig
Journal:  Neuron       Date:  2020-02-05       Impact factor: 17.173

Review 9.  Lineage analysis of epidermal stem cells.

Authors:  Maria P Alcolea; Philip H Jones
Journal:  Cold Spring Harb Perspect Med       Date:  2014-01-01       Impact factor: 6.915

Review 10.  The role of genomic imprinting in biology and disease: an expanding view.

Authors:  Jo Peters
Journal:  Nat Rev Genet       Date:  2014-06-24       Impact factor: 53.242

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